<html>
<head>
<style><!--
.hmmessage P
{
margin:0px;
padding:0px
}
body.hmmessage
{
font-size: 12pt;
font-family:Calibri
}
--></style></head>
<body class='hmmessage'><div dir='ltr'>Iman,<br>If you are just interested in the time-domain, I'd compute the ERPs one way or another, and for each ERP, I'd put the averaged data in EEG.data somehow, sort out EEG as if the ERP in EEG.data were a very short section of EEG, so you can plot it ok in EEGLAB, and then convert to fieldtrip with said function. Then do it in fieldtrip. Fieldtrip have a good online tutorial for doing this just in the time-domain. There are functions for converting between EEGLAB and fieldtrip. <BR>Best regards,<br>Tom.<BR><div> </div><br> <BR><div><div id="SkyDrivePlaceholder"></div><hr id="stopSpelling">From: irezazadeh@ucdavis.edu<br>To: arno@ucsd.edu; politzerahless@gmail.com<br>Date: Mon, 14 Jan 2013 11:36:46 -0800<br>CC: eeglablist@sccn.ucsd.edu<br>Subject: Re: [Eeglablist] Cluster-based permutation tests<br><br><style><!--
.ExternalClass p.ecxMsoNormal, .ExternalClass li.ecxMsoNormal, .ExternalClass div.ecxMsoNormal
{margin-bottom:.0001pt;font-size:12.0pt;font-family:"Times New Roman","serif";}
.ExternalClass a:link, .ExternalClass span.ecxMsoHyperlink
{color:blue;text-decoration:underline;}
.ExternalClass a:visited, .ExternalClass span.ecxMsoHyperlinkFollowed
{color:purple;text-decoration:underline;}
.ExternalClass span.ecxEmailStyle17
{font-family:"Calibri","sans-serif";color:#1F497D;}
.ExternalClass .ecxMsoChpDefault
{font-size:10.0pt;}
@page WordSection1
{size:8.5in 11.0in;}
.ExternalClass div.ecxWordSection1
{page:WordSection1;}
--></style><div class="ecxWordSection1"><p class="ecxMsoNormal"><span style='color: rgb(31, 73, 125); font-family: "Calibri","sans-serif"; font-size: 11pt;'>Hi Arno,</span></p><p class="ecxMsoNormal"><span style='color: rgb(31, 73, 125); font-family: "Calibri","sans-serif"; font-size: 11pt;'>Thanks for your reply! </span></p><p class="ecxMsoNormal"><span style='color: rgb(31, 73, 125); font-family: "Calibri","sans-serif"; font-size: 11pt;'>Actually, I want to do cluster-based permutation on EEG data ( not ICA stuff <a href="http://sccn.ucsd.edu/wiki/Chapter_04:_Processing_multiple_subjects_in_studies#Viewing_component_clusters" target="_blank">http://sccn.ucsd.edu/wiki/Chapter_04:_Processing_multiple_subjects_in_studies#Viewing_component_clusters</a></span></p><p class="ecxMsoNormal"><span style='color: rgb(31, 73, 125); font-family: "Calibri","sans-serif"; font-size: 11pt;'>) and I could not find the help for that in EEGLAB tutorial .</span></p><p class="ecxMsoNormal"><span style='color: rgb(31, 73, 125); font-family: "Calibri","sans-serif"; font-size: 11pt;'> </span></p><p class="ecxMsoNormal"><span style='color: rgb(31, 73, 125); font-family: "Calibri","sans-serif"; font-size: 11pt;'>Could you or any other EEGLABER please let me know how should I do the cluster-based permutation on time-domain data in EEGLAB ?</span></p><p class="ecxMsoNormal"><span style='color: rgb(31, 73, 125); font-family: "Calibri","sans-serif"; font-size: 11pt;'> </span></p><p class="ecxMsoNormal"><span style='color: rgb(31, 73, 125); font-family: "Calibri","sans-serif"; font-size: 11pt;'>Best,</span></p><p class="ecxMsoNormal"><span style='color: rgb(31, 73, 125); font-family: "Calibri","sans-serif"; font-size: 11pt;'>Iman</span></p><p class="ecxMsoNormal"><span style='color: rgb(31, 73, 125); font-family: "Calibri","sans-serif"; font-size: 11pt;'> </span></p><p class="ecxMsoNormal"><span style='color: rgb(31, 73, 125); font-family: "Calibri","sans-serif"; font-size: 11pt;'> </span></p><div><div style="border-width: 1pt medium medium; border-style: solid none none; border-color: rgb(181, 196, 223) currentColor currentColor; padding: 3pt 0in 0in;"><p class="ecxMsoNormal"><b><span style='font-family: "Tahoma","sans-serif"; font-size: 10pt;'>From:</span></b><span style='font-family: "Tahoma","sans-serif"; font-size: 10pt;'> Arnaud Delorme [mailto:arno@ucsd.edu] <br><b>Sent:</b> Saturday, January 12, 2013 7:57 PM<br><b>To:</b> Stephen Politzer-Ahles<br><b>Cc:</b> Iman M.Rezazadeh; eeglablist@sccn.ucsd.edu<br><b>Subject:</b> Re: [Eeglablist] Cluster-based permutation tests</span></p></div></div><p class="ecxMsoNormal"> </p><p class="ecxMsoNormal">Dear Iman,</p><div><p class="ecxMsoNormal"> </p></div><div><p class="ecxMsoNormal">yes EEGLAB can do the cluster-based permutation test like Fieldtrip (in fact, it is calling some Fieldtrip function to do that). It is only available in EEGLAB 12 though.</p></div><div><p class="ecxMsoNormal">Best,</p></div><div><p class="ecxMsoNormal"> </p></div><div><p class="ecxMsoNormal">Arno</p></div><div><p class="ecxMsoNormal"> </p><div><div><p class="ecxMsoNormal">On 20 Dec 2012, at 12:35, Stephen Politzer-Ahles wrote:</p></div><p class="ecxMsoNormal"><br><br></p><p style="margin-bottom: 12pt;" class="ecxMsoNormal">Hi Iman,<br><br>I'm not aware of any EEGLAB functions for doing that (although it seems there are some previous discussions on the list about bootstrap statistics, which are somewhat related). But since EEGLAB data can easily be imported directly into FieldTrip (see the EEGLAB function eeglab2fieldtrip() ) it should not be difficult to do that test in FieldTrip. (also, I'm not experienced with the Mass Univariate toolbox or ERPLAB, so my not mentioning them doesn't mean that they can't do this; I just don't know about them.)<br><br>Best,<br>Steve</p><div><p class="ecxMsoNormal">On Wed, Dec 19, 2012 at 8:06 PM, Iman M.Rezazadeh <<a href="mailto:irezazadeh@ucdavis.edu">irezazadeh@ucdavis.edu</a>> wrote:</p><div><div><p class="ecxMsoNormal">Hi <span style="color: rgb(31, 73, 125);">Dear EEGLABERS,</span></p><p class="ecxMsoNormal">Hope all is fine with you! </p><p class="ecxMsoNormal">Can EEGLAB do cluster based permutation test like fieldtrip <a href="http://fieldtrip.fcdonders.nl/tutorial/cluster_permutation_freq" target="_blank">http://fieldtrip.fcdonders.nl/tutorial/cluster_permutation_freq</a></p><p class="ecxMsoNormal"> </p><p class="ecxMsoNormal">or Mass Univariate ERP Toolbox <a href="http://openwetware.org/wiki/Mass_Univariate_ERP_Toolbox:_within-subject_t-tests#Cluster-based_permutation_tests" target="_blank">http://openwetware.org/wiki/Mass_Univariate_ERP_Toolbox:_within-subject_t-tests#Cluster-based_permutation_tests</a></p><p class="ecxMsoNormal"><span style="color: rgb(31, 73, 125);"> </span></p><p class="ecxMsoNormal">I am looking for having the ttest topo-cluster plot and raster plot… </p><p class="ecxMsoNormal">Best,</p><p class="ecxMsoNormal">Iman</p><p class="ecxMsoNormal"> </p><p class="ecxMsoNormal"><span style='font-family: "Arial","sans-serif";'>Iman M.Rezazadeh, PhD</span></p><p class="ecxMsoNormal"><span style='font-family: "Arial","sans-serif";'>Postdoctoral Research Fellow</span></p><p class="ecxMsoNormal"><span style='font-family: "Arial","sans-serif";'>Center for Mind and Brain</span></p><p class="ecxMsoNormal"><span style='font-family: "Arial","sans-serif";'>University of California, Davis</span></p><p class="ecxMsoNormal"><span style='font-family: "Arial","sans-serif";'><a href="mailto:irezazadeh@ucdavis.edu">irezazadeh@ucdavis.edu</a></span></p><p class="ecxMsoNormal"><span style='font-family: "Arial","sans-serif";'>Cell:<a target="_blank">310-490-1808</a></span></p><p class="ecxMsoNormal"><span style='font-family: "Arial","sans-serif";'>Skype: Imanmr</span></p><p class="ecxMsoNormal"> </p></div></div><p class="ecxMsoNormal"><br>_______________________________________________<br>Eeglablist page: <a href="http://sccn.ucsd.edu/eeglab/eeglabmail.html" target="_blank">http://sccn.ucsd.edu/eeglab/eeglabmail.html</a><br>To unsubscribe, send an empty email to <a href="mailto:eeglablist-unsubscribe@sccn.ucsd.edu">eeglablist-unsubscribe@sccn.ucsd.edu</a><br>For digest mode, send an email with the subject "set digest mime" to <a href="mailto:eeglablist-request@sccn.ucsd.edu">eeglablist-request@sccn.ucsd.edu</a></p></div><p class="ecxMsoNormal"><br><br clear="all"><br>-- <br>Stephen Politzer-Ahles<br>University of Kansas<br>Linguistics Department<br><a href="http://people.ku.edu/~sjpa/" target="_blank">http://people.ku.edu/~sjpa/</a> _______________________________________________<br>Eeglablist page: <a href="http://sccn.ucsd.edu/eeglab/eeglabmail.html" target="_blank">http://sccn.ucsd.edu/eeglab/eeglabmail.html</a><br>To unsubscribe, send an empty email to <a href="mailto:eeglablist-unsubscribe@sccn.ucsd.edu">eeglablist-unsubscribe@sccn.ucsd.edu</a><br>For digest mode, send an email with the subject "set digest mime" to <a href="mailto:eeglablist-request@sccn.ucsd.edu">eeglablist-request@sccn.ucsd.edu</a></p></div><p class="ecxMsoNormal"> </p></div></div><br>_______________________________________________
Eeglablist page: http://sccn.ucsd.edu/eeglab/eeglabmail.html
To unsubscribe, send an empty email to eeglablist-unsubscribe@sccn.ucsd.edu
For digest mode, send an email with the subject "set digest mime" to eeglablist-request@sccn.ucsd.edu</div> </div></body>
</html>