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<div style="direction: ltr;font-family: Tahoma;color: #000000;font-size: 10pt;">Hi EEGLab List,<br>
<br>
I just needed to <font face="Courier New">call chmod u+x amica12 </font> from the terminal for it to be recognized as an executable. I am running amica12 now.<br>
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<div class="PlainText">Jame<font size="2">s</font></div>
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<div style="direction: ltr;" id="divRpF366421"><font color="#000000" face="Tahoma" size="2"><b>From:</b> eeglablist-bounces@sccn.ucsd.edu [eeglablist-bounces@sccn.ucsd.edu] on behalf of James Desjardins<br>
<b>Sent:</b> February-09-13 3:02 PM<br>
<b>To:</b> eeglablist<br>
<b>Subject:</b> [Eeglablist] Compiling amica12 on the ORCA SHARCNet cluster<br>
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<div style="direction:ltr; font-family:Tahoma; color:#000000; font-size:10pt">Dear EEGLab List,<br>
<br>
I am trying to work AMICA into my default processing stream on the Shared Hierarchical Academic Research Computing Network (SHARCNet), but I am unable to get "amica12" or "amica12lnx64" recognized as an executable when submitting it to the ORCA cluster's mpi
queue.<br>
<br>
Up to this point I have been executing my work on these clusters within Matlab or Octave and this is my first attempt at running compiled source code.<br>
<br>
Is it the case that rather than trying to run the Open64 compiled amica12 file on ORCA I should be recompiling a source code specifically for execution on this cluster (as per the "compiling the source file" instructions here:
<font face="Courier New">https://www.sharcnet.ca/help/index.php/Getting_Started_with_Compiling_Code_on_SHARCNET</font>)? And if so, is such a source file available?<br>
<br>
If it is helpful to the solution the properties of the ORCA cluster are described her:
<font face="Courier New">https://www.sharcnet.ca/my/systems/show/73</font><br>
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As far as I can tell everything else is ready to go on the cluster (data files, paths, *.param files, etc...) it is just a matter of being able to execute the amica12 application (I kind of feel like I have a perpetual motion machine all ready... except for
that little piece that moves back and forth forever...)<br>
<br>
Thanks, and have a nice weekend!<br>
<br>
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<div class="PlainText">James Desjardins, MA<br>
Electrophysiology Technologist<br>
Cognitive and Affective Neuroscience Lab, Psychology Department <br>
Jack and Nora Walker Centre for Lifespan Development Research<br>
Brock University<br>
500 Glenridge Ave.<br>
St. Catharines, ON, Canada L2S 3A1<br>
905-688-5550 x4676<br>
--<br>
"'Cause you never can tell What goes on down below!<br>
"This pool might be bigger Than you or I know!"<br>
<br>
McElligot's Pool<br>
Dr.Seuss 1947</div>
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