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</o:shapelayout></xml><![endif]--></head><body lang=EN-US link=blue vlink=purple><div class=WordSection1><p class=MsoNormal><span style='color:black'>Hi Hendrik,<o:p></o:p></span></p><p class=MsoNormal><span style='color:black'><o:p> </o:p></span></p><p class=MsoNormal><span style='color:black'>“outdir” should be a string with the name of the output directory. If none is specified it uses “amicaouttmp”. So you would do something like,<o:p></o:p></span></p><p class=MsoNormal><span style='color:black'><o:p> </o:p></span></p><p class=MsoNormal><span style='color:black'>outdir = ‘/home/hendirk/expt1/subj1/’;<o:p></o:p></span></p><p class=MsoNormal><span style='color:black'>runamica12( ‘/home/hendrik/expt1/subj1/eegdat.fdt’, ‘numchans’, 64, ‘outdir’, outdir );<o:p></o:p></span></p><p class=MsoNormal><span style='color:black'>[W,S,mods] = loadmodout12(outdir); % you can load output while it’s running, default writeout is every 10 iterations<o:p></o:p></span></p><p class=MsoNormal><span style='color:black'><o:p> </o:p></span></p><p class=MsoNormal><span style='color:black'>If you just call it with data, as in “runamica12(EEG.data)”, then it will write the data to a tmp file, and use output directory “amicaouttmp” under then current working directory.<o:p></o:p></span></p><p class=MsoNormal><span style='color:black'><o:p> </o:p></span></p><p class=MsoNormal><span style='color:black'>The error message you got comes up when the outdir supplied to loadmodout12 is not a valid amica output directory name.<o:p></o:p></span></p><p class=MsoNormal><span style='color:black'><o:p> </o:p></span></p><p class=MsoNormal><span style='color:black'>Best,<o:p></o:p></span></p><p class=MsoNormal><span style='color:black'>Jason<o:p></o:p></span></p><p class=MsoNormal><span style='color:black'><o:p> </o:p></span></p><p class=MsoNormal><span style='color:black'><o:p> </o:p></span></p><p class=MsoNormal><span style='color:black'><o:p> </o:p></span></p><div><div style='border:none;border-top:solid #B5C4DF 1.0pt;padding:3.0pt 0in 0in 0in'><p class=MsoNormal><b><span style='font-size:10.0pt;font-family:"Tahoma","sans-serif";mso-fareast-language:ZH-CN'>From:</span></b><span style='font-size:10.0pt;font-family:"Tahoma","sans-serif";mso-fareast-language:ZH-CN'> eeglablist-bounces@sccn.ucsd.edu [mailto:eeglablist-bounces@sccn.ucsd.edu] <b>On Behalf Of </b>Hendrik Enders<br><b>Sent:</b> Thursday, May 01, 2014 5:47 PM<br><b>To:</b> eeglablist@sccn.ucsd.edu<br><b>Subject:</b> [Eeglablist] amica problem<o:p></o:p></span></p></div></div><p class=MsoNormal><o:p> </o:p></p><p class=MsoNormal><span lang=EN-CA>Hi,<o:p></o:p></span></p><p class=MsoNormal><span lang=EN-CA><o:p> </o:p></span></p><p class=MsoNormal style='text-autospace:none'><span lang=EN-CA>I am trying to use the AMICA algorithm. After evaluating </span><span lang=EN-CA style='font-size:10.0pt;font-family:"Courier New";color:black'>mods = loadmodout12(outdir); </span><span lang=EN-CA>I get the following message:</span><span lang=EN-CA style='font-size:10.0pt;font-family:"Courier New";color:black'><o:p></o:p></span></p><p class=MsoNormal style='text-autospace:none'><span lang=EN-CA style='font-size:10.0pt;font-family:"Courier New";color:black'><o:p> </o:p></span></p><p class=MsoNormal style='text-autospace:none'><span lang=EN-CA style='font-size:10.0pt;font-family:"Courier New"'>No gm present, setting num_models to 1<o:p></o:p></span></p><p class=MsoNormal style='text-autospace:none'><span lang=EN-CA style='font-size:10.0pt;font-family:"Courier New"'>No W present, exiting<o:p></o:p></span></p><p class=MsoNormal><span lang=EN-CA><o:p> </o:p></span></p><p class=MsoNormal><span lang=EN-CA>I am not sure if the problem actually results from line 850<o:p></o:p></span></p><p class=MsoNormal><span lang=EN-CA><o:p> </o:p></span></p><p class=MsoNormal style='text-autospace:none'><span lang=EN-CA style='font-size:10.0pt;font-family:"Courier New";color:black'>system([AMBIN </span><span lang=EN-CA style='font-size:10.0pt;font-family:"Courier New";color:#A020F0'>' '</span><span lang=EN-CA style='font-size:10.0pt;font-family:"Courier New";color:black'> outdir </span><span lang=EN-CA style='font-size:10.0pt;font-family:"Courier New";color:#A020F0'>'input.param'</span><span lang=EN-CA style='font-size:10.0pt;font-family:"Courier New";color:black'>]);<o:p></o:p></span></p><p class=MsoNormal style='text-autospace:none'><span lang=EN-CA style='font-size:10.0pt;font-family:"Courier New";color:black'><o:p> </o:p></span></p><p class=MsoNormal style='text-autospace:none'><span lang=EN-CA>After this line the folder </span><span lang=EN-CA style='font-size:10.0pt;font-family:"Courier New";color:black'>amicaouttmp</span><span lang=EN-CA> only contains the </span><span lang=EN-CA style='font-size:10.0pt;font-family:"Courier New";color:black'>input.param</span><span lang=EN-CA> file. However, there are no other files that may be necessary for the loadmodout12 function.<o:p></o:p></span></p><p class=MsoNormal style='text-autospace:none'><span lang=EN-CA><o:p> </o:p></span></p><p class=MsoNormal style='text-autospace:none'><span lang=EN-CA>Can anybody help?<o:p></o:p></span></p><p class=MsoNormal style='text-autospace:none'><span lang=EN-CA>Thanks<o:p></o:p></span></p><p class=MsoNormal style='text-autospace:none'><span lang=EN-CA><o:p> </o:p></span></p><p class=MsoNormal style='text-autospace:none'><span lang=EN-CA>Hendrik<o:p></o:p></span></p><p class=MsoNormal><span lang=EN-CA><o:p> </o:p></span></p></div></body></html>