<div dir="ltr">Dear Jason,<div><br></div><div>Could you help us here?</div><div><br></div><div>Makoto</div></div><div class="gmail_extra"><br><div class="gmail_quote">On Thu, Jun 4, 2015 at 3:43 PM, Tyler Grummett <span dir="ltr"><<a href="mailto:tyler.grummett@flinders.edu.au" target="_blank">tyler.grummett@flinders.edu.au</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0 0 0 .8ex;border-left:1px #ccc solid;padding-left:1ex">
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<div>Hey Srinivas,</div>
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<div>AMICA has always struggled for me on matlab 2014a. I've run the code perfectly on 2012a and then used the same script in 2014a/b and it's given me the same kind of error.</div>
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<div>I'm hoping someone with more experience will answer you, but it at least doesn't appear as though you're doing something wrong.</div>
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<div>Hope that helps :)</div>
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<div>Tyler<br>
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On 5 Jun 2015, at 7:00 am, Srinivas Kota <<a href="mailto:svkota@gmail.com" target="_blank">svkota@gmail.com</a>> wrote:<br>
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<blockquote type="cite">
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<div dir="ltr">Any help would be appreciated with AMICA error.
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<div>I am using MATLAB R2014a on Mac OS 10.9.5. Here is the two lines of code I was trying to run.
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<div>outdir = '/Users/administrator/Desktop/amica_practice/output';</div>
<div>runamica12( 'Memorize.fdt', 'num_chans', 71,'outdir', outdir );</div>
<div><br>
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<div>To track error, I made minor changes in runamica12.m</div>
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<div>% from line 850</div>
<div>
<div>if RUN_LOCALLY == 1</div>
<div> disp('line 852')</div>
<div> AMBIN</div>
<div> outdir</div>
<div> system([AMBIN ' ' outdir 'input.param'])</div>
<div> mods = loadmodout12(outdir)</div>
<div> weights = mods.W(:,:,1);</div>
<div> sphere = mods.S(1:mods.num_pcs,:);</div>
<div> if isnumeric(dat)</div>
<div> delete(filename);</div>
<div> %system(['rm ' pwd filesep 'tmpdata.fdt']);</div>
<div> %system(['del ' pwd filesep 'tmpdata.fdt']);</div>
<div> end</div>
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<div><b><br>
</b></div>
<b>Here is the error :</b></div>
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<div>
<div>/bin/bash: qconf: command not found</div>
<div>/bin/bash: qconf: command not found</div>
<div>/bin/bash: qconf: command not found</div>
<div>No recognized parallel environment found. Run qconf -spl to get a list of available environments and use keyword use_pe.</div>
<div>Running locally with maximum of 4 threads.</div>
<div>mkdir: /Users/administrator/Desktop/amica_practice/output/: File exists</div>
<div>line 852</div>
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<div>AMBIN = /Users/administrator/Desktop/amica_matlab_scripts/amica12mac64</div>
<div>outdid = /Users/administrator/Desktop/amica_practice/output/</div>
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<div><font color="#ff0000">/bin/bash: /Users/administrator/Desktop/amica_matlab_scripts/amica12mac64: Permission denied</font></div>
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<div>ans = 126</div>
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<div>No gm present, setting num_models to 1</div>
<div>No W present, exiting</div>
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<div>mods = </div>
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<div> num_models: 1</div>
<div> mod_prob: 1</div>
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<div><span style="background-color:rgb(238,238,238)"><font color="#ff0000">Reference to non-existent field 'W'.</font></span></div>
<div><span style="background-color:rgb(238,238,238)"><font color="#ff0000"><br>
</font></span></div>
<div><span style="background-color:rgb(238,238,238)"><font color="#ff0000">Error in runamica12 (line 856)</font></span></div>
<div><span style="background-color:rgb(238,238,238)"><font color="#ff0000"> weights = mods.W(:,:,1);</font></span></div>
<div><span style="background-color:rgb(238,238,238)"><font color="#ff0000"><br>
</font></span></div>
<div><span style="background-color:rgb(238,238,238)"><font color="#ff0000">Error in prac_amica (line 7)</font></span></div>
<div><span style="background-color:rgb(238,238,238)"><font color="#ff0000">runamica12( 'Memorize.fdt', 'num_chans', 71,'outdir', outdir );</font></span></div>
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<div>Srinivas Kota, Ph.D<br>
Research Scientist<br>
Movement and Neurosciences Center<br>
Institute for Rehabilitation Science and Engineering<br>
Madonna Rehabilitation Hospital<br>
5401 South St, Lincoln, NE 68506<br>
Email: <a href="mailto:svkota@gmail.com" target="_blank">svkota@gmail.com</a><br>
Ph: <a value="+16183190471">(618) 319-0471</a> (cell)<font color="#3F0080" face="Comic Sans MS,sans-serif" size="2"><span style="font-size:14px"><font color="black" face="Tahoma" size="2"><span style="font-size:10pt" dir="ltr"><font size="1"><span style="font-size:13px"><font face="Arial"><font size="2"><br>
<a href="https://owa.madonna.org/owa/redir.aspx?C=RNnR5lrQvEmYU7lVtl6kLHIjwe3PiNAI8ouI90lD2Vnn4niuQ5QMBdLYDKmByFhfb525xS5XXT8.&URL=http%3a%2f%2fwww.madonna.org%2fresearch_institute%2findex.html" target="_blank"><font face="Tahoma"><font size="3"><span style="font-size:12pt" lang="en">www.madonna.org/research_institute/index.html</span></font></font></a><font face="Tahoma"><span lang="en">
</span></font><font face="Tahoma"><span lang="ja"> </span></font></font></font></span></font></span></font></span></font><br>
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