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</o:shapelayout></xml><![endif]--></head><body lang=EN-US link=blue vlink=purple><div class=WordSection1><p class=MsoNormal><span style='font-size:11.0pt;font-family:"Calibri","sans-serif";color:black'>From the error message, it looks like there is a permission problem. Can you use chmod or something in a Mac terminal to make amica12mac64 executable by all? I’m not a regular mac user, and don’t recall getting this in testing, but that’s the only thing I can see from the output. The binary is not running. As a baseline test, you should be able to run “amica12mac64 amicadefs.param” on the mac command line.<o:p></o:p></span></p><p class=MsoNormal><span style='font-size:11.0pt;font-family:"Calibri","sans-serif";color:black'>Jason<o:p></o:p></span></p><p class=MsoNormal><span style='font-size:11.0pt;font-family:"Calibri","sans-serif";color:black'><o:p> </o:p></span></p><p class=MsoNormal><b><span style='font-size:10.0pt;font-family:"Tahoma","sans-serif"'>From:</span></b><span style='font-size:10.0pt;font-family:"Tahoma","sans-serif"'> Makoto Miyakoshi [mailto:mmiyakoshi@ucsd.edu] <br><b>Sent:</b> Sunday, June 07, 2015 6:58 PM<br><b>To:</b> Tyler Grummett; Srinivas Kota; Jason Palmer<br><b>Cc:</b> EEGLAB List<br><b>Subject:</b> Re: [Eeglablist] AMICA Error<o:p></o:p></span></p><p class=MsoNormal><o:p> </o:p></p><div><p class=MsoNormal>Dear Jason,<o:p></o:p></p><div><p class=MsoNormal><o:p> </o:p></p></div><div><p class=MsoNormal>Could you help us here?<o:p></o:p></p></div><div><p class=MsoNormal><o:p> </o:p></p></div><div><p class=MsoNormal>Makoto<o:p></o:p></p></div></div><div><p class=MsoNormal><o:p> </o:p></p><div><p class=MsoNormal>On Thu, Jun 4, 2015 at 3:43 PM, Tyler Grummett <<a href="mailto:tyler.grummett@flinders.edu.au" target="_blank">tyler.grummett@flinders.edu.au</a>> wrote:<o:p></o:p></p><div><div><p class=MsoNormal>Hey Srinivas,<o:p></o:p></p></div><div><p class=MsoNormal><o:p> </o:p></p></div><div><p class=MsoNormal>AMICA has always struggled for me on matlab 2014a. I've run the code perfectly on 2012a and then used the same script in 2014a/b and it's given me the same kind of error.<o:p></o:p></p></div><div><p class=MsoNormal><o:p> </o:p></p></div><div><p class=MsoNormal>I'm hoping someone with more experience will answer you, but it at least doesn't appear as though you're doing something wrong.<o:p></o:p></p></div><div><p class=MsoNormal><o:p> </o:p></p></div><div><p class=MsoNormal>Hope that helps :)<o:p></o:p></p></div><div><p class=MsoNormal><o:p> </o:p></p></div><div><p class=MsoNormal style='margin-bottom:12.0pt'>Tyler<br><br><o:p></o:p></p></div><div><div><div><p class=MsoNormal style='margin-bottom:12.0pt'><br>On 5 Jun 2015, at 7:00 am, Srinivas Kota <<a href="mailto:svkota@gmail.com" target="_blank">svkota@gmail.com</a>> wrote:<o:p></o:p></p></div><blockquote style='margin-top:5.0pt;margin-bottom:5.0pt'><div><div><p class=MsoNormal>Any help would be appreciated with AMICA error. <o:p></o:p></p><div><p class=MsoNormal><o:p> </o:p></p></div><div><p class=MsoNormal>I am using MATLAB R2014a on Mac OS 10.9.5. Here is the two lines of code I was trying to run. <o:p></o:p></p><div><p class=MsoNormal><o:p> </o:p></p></div><div><div><p class=MsoNormal>outdir = '/Users/administrator/Desktop/amica_practice/output';<o:p></o:p></p></div><div><p class=MsoNormal>runamica12( 'Memorize.fdt', 'num_chans', 71,'outdir', outdir );<o:p></o:p></p></div><div><p class=MsoNormal><o:p> </o:p></p></div><div><p class=MsoNormal>To track error, I made minor changes in runamica12.m<o:p></o:p></p></div><div><p class=MsoNormal><o:p> </o:p></p></div><div><p class=MsoNormal>% from line 850<o:p></o:p></p></div><div><div><p class=MsoNormal>if RUN_LOCALLY == 1<o:p></o:p></p></div><div><p class=MsoNormal> disp('line 852')<o:p></o:p></p></div><div><p class=MsoNormal> AMBIN<o:p></o:p></p></div><div><p class=MsoNormal> outdir<o:p></o:p></p></div><div><p class=MsoNormal> system([AMBIN ' ' outdir 'input.param'])<o:p></o:p></p></div><div><p class=MsoNormal> mods = loadmodout12(outdir)<o:p></o:p></p></div><div><p class=MsoNormal> weights = mods.W(:,:,1);<o:p></o:p></p></div><div><p class=MsoNormal> sphere = mods.S(1:mods.num_pcs,:);<o:p></o:p></p></div><div><p class=MsoNormal> if isnumeric(dat)<o:p></o:p></p></div><div><p class=MsoNormal> delete(filename);<o:p></o:p></p></div><div><p class=MsoNormal> %system(['rm ' pwd filesep 'tmpdata.fdt']);<o:p></o:p></p></div><div><p class=MsoNormal> %system(['del ' pwd filesep 'tmpdata.fdt']);<o:p></o:p></p></div><div><p class=MsoNormal> end<o:p></o:p></p></div></div><div><p class=MsoNormal><o:p> </o:p></p></div><p class=MsoNormal><b>Here is the error :</b><o:p></o:p></p></div><div><p class=MsoNormal><o:p> </o:p></p></div><div><div><p class=MsoNormal>/bin/bash: qconf: command not found<o:p></o:p></p></div><div><p class=MsoNormal>/bin/bash: qconf: command not found<o:p></o:p></p></div><div><p class=MsoNormal>/bin/bash: qconf: command not found<o:p></o:p></p></div><div><p class=MsoNormal>No recognized parallel environment found. Run qconf -spl to get a list of available environments and use keyword use_pe.<o:p></o:p></p></div><div><p class=MsoNormal>Running locally with maximum of 4 threads.<o:p></o:p></p></div><div><p class=MsoNormal>mkdir: /Users/administrator/Desktop/amica_practice/output/: File exists<o:p></o:p></p></div><div><p class=MsoNormal>line 852<o:p></o:p></p></div><div><p class=MsoNormal><o:p> </o:p></p></div><div><p class=MsoNormal>AMBIN = /Users/administrator/Desktop/amica_matlab_scripts/amica12mac64<o:p></o:p></p></div><div><p class=MsoNormal>outdid = /Users/administrator/Desktop/amica_practice/output/<o:p></o:p></p></div><div><p class=MsoNormal><o:p> </o:p></p></div><div><p class=MsoNormal><span style='color:red'>/bin/bash: /Users/administrator/Desktop/amica_matlab_scripts/amica12mac64: Permission denied</span><o:p></o:p></p></div><div><p class=MsoNormal><o:p> </o:p></p></div><div><p class=MsoNormal>ans = 126<o:p></o:p></p></div><div><p class=MsoNormal><o:p> </o:p></p></div><div><p class=MsoNormal>No gm present, setting num_models to 1<o:p></o:p></p></div><div><p class=MsoNormal>No W present, exiting<o:p></o:p></p></div><div><p class=MsoNormal><o:p> </o:p></p></div><div><p class=MsoNormal>mods = <o:p></o:p></p></div><div><p class=MsoNormal><o:p> </o:p></p></div><div><p class=MsoNormal> num_models: 1<o:p></o:p></p></div><div><p class=MsoNormal> mod_prob: 1<o:p></o:p></p></div><div><p class=MsoNormal><o:p> </o:p></p></div><div><p class=MsoNormal><span style='color:red;background:#EEEEEE'>Reference to non-existent field 'W'.</span><o:p></o:p></p></div><div><p class=MsoNormal><o:p> </o:p></p></div><div><p class=MsoNormal><span style='color:red;background:#EEEEEE'>Error in runamica12 (line 856)</span><o:p></o:p></p></div><div><p class=MsoNormal><span style='color:red;background:#EEEEEE'> weights = mods.W(:,:,1);</span><o:p></o:p></p></div><div><p class=MsoNormal><o:p> </o:p></p></div><div><p class=MsoNormal><span style='color:red;background:#EEEEEE'>Error in prac_amica (line 7)</span><o:p></o:p></p></div><div><p class=MsoNormal><span style='color:red;background:#EEEEEE'>runamica12( 'Memorize.fdt', 'num_chans', 71,'outdir', outdir );</span><o:p></o:p></p></div><div><div><p class=MsoNormal><br>*********************************************************** <o:p></o:p></p><div><p class=MsoNormal>Srinivas Kota, Ph.D<br>Research Scientist<br>Movement and Neurosciences Center<br>Institute for Rehabilitation Science and Engineering<br>Madonna Rehabilitation Hospital<br>5401 South St, Lincoln, NE 68506<br>Email: <a href="mailto:svkota@gmail.com" target="_blank">svkota@gmail.com</a><br>Ph: (618) 319-0471 (cell)<span style='font-size:10.0pt;font-family:"Arial","sans-serif";color:black'><br><a href="https://owa.madonna.org/owa/redir.aspx?C=RNnR5lrQvEmYU7lVtl6kLHIjwe3PiNAI8ouI90lD2Vnn4niuQ5QMBdLYDKmByFhfb525xS5XXT8.&URL=http%3a%2f%2fwww.madonna.org%2fresearch_institute%2findex.html" target="_blank"><span lang=EN style='font-size:12.0pt;font-family:"Tahoma","sans-serif"'>www.madonna.org/research_institute/index.html</span></a></span><span style='font-size:10.0pt;font-family:"Tahoma","sans-serif";color:black'> </span><span lang=JA style='font-size:10.0pt;font-family:SimSun;color:black;mso-fareast-language:JA'> </span><br>***********************************************************<o:p></o:p></p></div></div></div></div></div></div></div></blockquote></div></div><blockquote style='margin-top:5.0pt;margin-bottom:5.0pt'><div><p class=MsoNormal>_______________________________________________<br>Eeglablist page: <a href="http://sccn.ucsd.edu/eeglab/eeglabmail.html" target="_blank">http://sccn.ucsd.edu/eeglab/eeglabmail.html</a><br>To unsubscribe, send an empty email to <a href="mailto:eeglablist-unsubscribe@sccn.ucsd.edu" target="_blank">eeglablist-unsubscribe@sccn.ucsd.edu</a><br>For digest mode, send an email with the subject "set digest mime" to <a href="mailto:eeglablist-request@sccn.ucsd.edu" target="_blank">eeglablist-request@sccn.ucsd.edu</a><o:p></o:p></p></div></blockquote></div><p class=MsoNormal><br>_______________________________________________<br>Eeglablist page: <a href="http://sccn.ucsd.edu/eeglab/eeglabmail.html" target="_blank">http://sccn.ucsd.edu/eeglab/eeglabmail.html</a><br>To unsubscribe, send an empty email to <a href="mailto:eeglablist-unsubscribe@sccn.ucsd.edu">eeglablist-unsubscribe@sccn.ucsd.edu</a><br>For digest mode, send an email with the subject "set digest mime" to <a href="mailto:eeglablist-request@sccn.ucsd.edu">eeglablist-request@sccn.ucsd.edu</a><o:p></o:p></p></div><p class=MsoNormal><br><br clear=all><o:p></o:p></p><div><p class=MsoNormal><o:p> </o:p></p></div><p class=MsoNormal>-- <o:p></o:p></p><div><div><p class=MsoNormal>Makoto Miyakoshi<br>Swartz Center for Computational Neuroscience<br>Institute for Neural Computation, University of California San Diego<o:p></o:p></p></div></div></div></div></body></html>