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Hi and thanks for your reply,<br>
I actually downloaded the binary files recently from the website into the systems 32 folder. I use a windows computer. I'm concerned that as it's a work computer that it could be an access issue as the administrator had to help me save the files there- I do
not have higher level administrator rights over the systems 32 folder. Is there anywhere else I can save the binary files?<br>
Apart from adding the binary files and setting the matlab path to the new amica folder, is there anything else that I should be doing?<br>
Best wishes,<br>
Jumana <br>
------------------------------------------<br>
Jumana Ahmad<br>
Post-Doctoral Research Worker in Cognitive Neuroscience<br>
EU-AIMS Longitudinal European Autism Project (LEAP) & SynaG Study<br>
Room M1.26.Department of Forensic and Neurodevelopmental Sciences (PO 23) | Institute of Psychiatry, Psychology & Neuroscience | King’s College London | 16 De Crespigny Park | London SE5 8AF<br>
<br>
Phone: 0207 848 5359| Email: jumana.ahmad@kcl.ac.uk | Website: www.eu-aims.eu | Facebook: www.facebook.com/euaims<br>
<br>
<hr style="display:inline-block;width:98%" tabindex="-1">
<div id="divRplyFwdMsg" dir="ltr"><font face="Calibri, sans-serif" style="font-size:11pt" color="#000000"><b>From:</b> Murray, Nicholas P <MURRAYNI@ecu.edu><br>
<b>Sent:</b> 08 February 2017 21:05:33<br>
<b>To:</b> Ahmad, Jumana<br>
<b>Subject:</b> RE: [Eeglablist] AMICA setup</font>
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<p class="MsoNormal"><span style="color:#1F497D">Jumana<o:p></o:p></span></p>
<p class="MsoNormal"><span style="color:#1F497D">We had the same problem. We updated the binary files found on
<a href="https://emea01.safelinks.protection.outlook.com/?url=https:%2F%2Fsccn.ucsd.edu%2F~jason%2Famica_web.html&data=01%7C01%7Cjumana.ahmad%40kcl.ac.uk%7Cab8681cfd95449b185c708d450557d4e%7C8370cf1416f34c16b83c724071654356%7C0&sdata=d5QcgfjVWZsuZUAKgYXHAlyANTr2Af10yhtDp47LQAQ%3D&reserved=0">
https://sccn.ucsd.edu/~jason/amica_web.html</a> <o:p></o:p></span></p>
<p class="MsoNormal"><span style="color:#1F497D">While this seems to be a simple fix: the file path must not include spaces. It corrected this problem and ran.<o:p></o:p></span></p>
<p class="MsoNormal"><span style="color:#1F497D">Nick<o:p></o:p></span></p>
<p class="MsoNormal"><span style="color:#1F497D"><o:p> </o:p></span></p>
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<p class="MsoNormal"><b>From:</b> eeglablist-bounces@sccn.ucsd.edu [mailto:eeglablist-bounces@sccn.ucsd.edu]
<b>On Behalf Of </b>Ahmad, Jumana<br>
<b>Sent:</b> Wednesday, February 08, 2017 12:59 PM<br>
<b>To:</b> japalmer@ucsd.edu; eeglablist@sccn.ucsd.edu<br>
<b>Subject:</b> Re: [Eeglablist] AMICA setup<o:p></o:p></p>
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<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal"><span lang="EN-GB" style="color:#1F497D">Dear Jason,<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-GB" style="color:#1F497D">Thank you. I now instead get this error:<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-GB" style="color:#1F497D"><o:p> </o:p></span></p>
<p class="MsoNormal"><span lang="EN-GB" style="color:#1F497D">Reference to non-existent field 'W'.<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-GB" style="color:#1F497D"><o:p> </o:p></span></p>
<p class="MsoNormal"><span lang="EN-GB" style="color:#1F497D">Error in runamica15 (line 869)<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-GB" style="color:#1F497D"> weights = mods.W(:,:,1);<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-GB" style="color:#1F497D"><o:p> </o:p></span></p>
<p class="MsoNormal"><span lang="EN-GB" style="color:#1F497D">Error in ICA2_AMICA (line 112)<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-GB" style="color:#1F497D"> runamica15(data.data, 'num_chans', data.nbchan,...<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-GB" style="color:#1F497D"><o:p> </o:p></span></p>
<p class="MsoNormal"><span lang="EN-GB" style="color:#1F497D">Best wishes,<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-GB" style="color:#1F497D">Jumana <o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-GB" style="color:#1F497D"><o:p> </o:p></span></p>
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<p class="MsoNormal"><b><span style="mso-fareast-language:EN-GB">From:</span></b><span style="mso-fareast-language:EN-GB"> Jason Palmer [<a href="mailto:japalmer29@gmail.com">mailto:japalmer29@gmail.com</a>]
<br>
<b>Sent:</b> 04 February 2017 06:49<br>
<b>To:</b> Ahmad, Jumana <<a href="mailto:jumana.ahmad@kcl.ac.uk">jumana.ahmad@kcl.ac.uk</a>>;
<a href="mailto:eeglablist@sccn.ucsd.edu">eeglablist@sccn.ucsd.edu</a><br>
<b>Subject:</b> RE: [Eeglablist] AMICA setup<o:p></o:p></span></p>
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<p class="MsoNormal"><span lang="EN-GB"><o:p> </o:p></span></p>
<p class="MsoNormal"><span style="color:black">Dear Jumana,<o:p></o:p></span></p>
<p class="MsoNormal"><span style="color:black"><o:p> </o:p></span></p>
<p class="MsoNormal"><span style="color:black">The variable AMBIN is set by checking whether the binary file is in the directory where the runamica15.m file is. Are you sure you have the amica15mkl.exe file in the amica1.5 plugin directory or whichever directory
you have the runamica15.m file in?<o:p></o:p></span></p>
<p class="MsoNormal"><span style="color:black"><o:p> </o:p></span></p>
<p class="MsoNormal"><span style="color:black">Best,<o:p></o:p></span></p>
<p class="MsoNormal"><span style="color:black">Jason<o:p></o:p></span></p>
<p class="MsoNormal"><span style="color:black"><o:p> </o:p></span></p>
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<p class="MsoNormal"><b><span style="font-size:10.0pt;font-family:"Tahoma",sans-serif;mso-fareast-language:ZH-CN">From:</span></b><span style="font-size:10.0pt;font-family:"Tahoma",sans-serif;mso-fareast-language:ZH-CN">
<a href="mailto:eeglablist-bounces@sccn.ucsd.edu">eeglablist-bounces@sccn.ucsd.edu</a> [<a href="mailto:eeglablist-bounces@sccn.ucsd.edu">mailto:eeglablist-bounces@sccn.ucsd.edu</a>]
<b>On Behalf Of </b>Ahmad, Jumana<br>
<b>Sent:</b> Saturday, February 04, 2017 7:26 AM<br>
<b>To:</b> <a href="mailto:eeglablist@sccn.ucsd.edu">eeglablist@sccn.ucsd.edu</a><br>
<b>Subject:</b> [Eeglablist] AMICA setup<o:p></o:p></span></p>
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<p class="MsoNormal"><o:p> </o:p></p>
<p class="MsoNormal"><span lang="EN-GB">Dear all,<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-GB">I have the following error when setting up AMICA:<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-GB"><o:p> </o:p></span></p>
<p class="MsoNormal"><span lang="EN-GB">Undefined function or variable 'AMBIN'.<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-GB"><o:p> </o:p></span></p>
<p class="MsoNormal"><span lang="EN-GB">Error in runamica15 (line 867)<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-GB"> system([AMBIN ' ' outdir 'input.param']);<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-GB"><o:p> </o:p></span></p>
<p class="MsoNormal"><span lang="EN-GB">Error in ICA2_AMICA (line 112)<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-GB"> runamica15(data.data, 'num_chans', data.nbchan,...<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-GB"><o:p> </o:p></span></p>
<p class="MsoNormal"><span lang="EN-GB">I set it up fine on my personal PC, but my work PC is giving this error.<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-GB">Could it be due to the windows32 folder access where I saved the binary files?<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-GB">Best wishes,<o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-GB">Jumana <o:p></o:p></span></p>
<p class="MsoNormal"><span lang="EN-GB"><o:p> </o:p></span></p>
<p class="MsoNormal" style="background:white"><b><span lang="EN-GB" style="font-size:10.0pt;color:#1F497D;mso-fareast-language:EN-GB">------------------------------------------</span></b><span lang="EN-GB" style="font-family:"Helvetica",sans-serif;color:black;mso-fareast-language:EN-GB"><o:p></o:p></span></p>
<p class="MsoNormal" style="background:white"><b><span lang="EN-GB" style="font-size:10.0pt;color:#1F497D;background:#FFEE94;mso-fareast-language:EN-GB">Jumana Ahmad</span></b><span lang="EN-GB" style="font-family:"Helvetica",sans-serif;color:black;mso-fareast-language:EN-GB"><o:p></o:p></span></p>
<p class="MsoNormal" style="background:white"><span lang="EN-GB" style="font-size:10.0pt;color:#1F497D;mso-fareast-language:EN-GB">Post-Doctoral Research Worker in Cognitive Neuroscience </span><span lang="EN-GB" style="font-family:"Helvetica",sans-serif;color:black;mso-fareast-language:EN-GB"><o:p></o:p></span></p>
<p class="MsoNormal" style="background:white"><i><span lang="EN-GB" style="font-size:10.0pt;color:#1F497D;mso-fareast-language:EN-GB">EU-AIMS Longitudinal European Autism Project (LEAP) & SynaG Study</span></i><span lang="EN-GB" style="font-family:"Helvetica",sans-serif;color:black;mso-fareast-language:EN-GB"><o:p></o:p></span></p>
<p class="MsoNormal" style="background:white"><span lang="EN-GB" style="font-size:10.0pt;color:#1F497D;mso-fareast-language:EN-GB">Room M1.09. Department of Forensic and Neurodevelopmental Sciences (PO 23) | Institute of Psychiatry, Psychology & Neuroscience
| King’s College London | 16 De Crespigny Park | London SE5 8AF</span><span lang="EN-GB" style="font-family:"Helvetica",sans-serif;color:black;mso-fareast-language:EN-GB"><o:p></o:p></span></p>
<p class="MsoNormal" style="background:white"><span lang="EN-GB" style="font-size:10.0pt;color:#1F497D;mso-fareast-language:EN-GB"> </span><span lang="EN-GB" style="font-family:"Helvetica",sans-serif;color:black;mso-fareast-language:EN-GB"><o:p></o:p></span></p>
<p class="MsoNormal" style="background:white"><b><span lang="EN-GB" style="font-size:10.0pt;color:#1F497D;mso-fareast-language:EN-GB">Phone:</span></b><span lang="EN-GB" style="font-size:10.0pt;color:#1F497D;mso-fareast-language:EN-GB"> </span><span style="font-size:10.0pt;color:navy;mso-fareast-language:EN-GB">0207848
0260</span><span lang="EN-GB" style="font-size:10.0pt;color:#1F497D;mso-fareast-language:EN-GB">| <b>Email:</b> <span style="background:#FFEE94">jumana.ahmad</span></span><span lang="EN-GB" style="color:black;mso-fareast-language:EN-GB"><a href="mailto:antonia.sanjose@kcl.ac.uk" target="_blank"><span style="font-size:10.0pt;color:purple">@kcl.ac.uk</span></a></span><span lang="EN-GB" style="font-size:10.0pt;color:#1F497D;mso-fareast-language:EN-GB"> | <b>Website:</b> </span><span lang="EN-GB" style="color:black;mso-fareast-language:EN-GB"><a href="https://emea01.safelinks.protection.outlook.com/?url=http%3A%2F%2Fwww.eu-aims.eu%2F&data=01%7C01%7Cjumana.ahmad%40kcl.ac.uk%7Cec14cc70d54b4bbe934008d44cc9dffb%7C8370cf1416f34c16b83c724071654356%7C0&sdata=ukxSGrb5GwQXQpTdhBydP9MKMe3uPzpDqk1IXNVU2eg%3D&reserved=0" target="_blank"><span style="font-size:10.0pt;color:purple">www.eu-aims.eu</span></a></span><span lang="EN-GB" style="font-size:10.0pt;color:#1F497D;mso-fareast-language:EN-GB"> | <b>Facebook:</b> </span><span lang="EN-GB" style="color:black;mso-fareast-language:EN-GB"><a href="https://emea01.safelinks.protection.outlook.com/?url=http%3A%2F%2Fwww.facebook.com%2Feuaims&data=01%7C01%7Cjumana.ahmad%40kcl.ac.uk%7Cec14cc70d54b4bbe934008d44cc9dffb%7C8370cf1416f34c16b83c724071654356%7C0&sdata=fUmFeDZBPHOL8pyW%2BMO7tWwGLu59yl1Ao85K4nNjP0w%3D&reserved=0" target="_blank"><span style="font-size:10.0pt;color:purple">www.facebook.com/euaims</span></a></span><span lang="EN-GB" style="font-family:"Helvetica",sans-serif;color:black;mso-fareast-language:EN-GB"><o:p></o:p></span></p>
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<p class="MsoNormal"><b><span lang="EN-GB" style="font-size:10.0pt;color:#1F497D;mso-fareast-language:EN-GB">We are currently looking for volunteers with mild intellectual disability to be part of our exciting and world-leading European project into brain development
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