<div dir="ltr"><div class="gmail_default" style="color:rgb(51,51,153)"><br></div><div class="gmail_default" style="color:rgb(51,51,153)">Hello Memhet, here are some notes below, best wishes!</div><div class="gmail_default" style="color:rgb(51,51,153)"><br></div><div class="gmail_default" style="color:rgb(51,51,153)"><br></div><div class="gmail_default" style="color:rgb(51,51,153)"><br></div><div class="gmail_default" style="color:rgb(51,51,153)"><br></div><div class="gmail_default" style="color:rgb(51,51,153)"><br></div><div class="gmail_default" style="color:rgb(51,51,153)">*****************************************************************************************,</div><div class="gmail_default" style="color:rgb(51,51,153)">This should be working okay. Please note with 19 electrodes you should be very wary of ICA and source estimation results. With a little trial and error, you should be able to see if you your data can lead to interpretable ICs and dipoles.</div><div class="gmail_default" style="color:rgb(51,51,153)"><br></div><div class="gmail_default" style="color:rgb(51,51,153)">Your code seems generally okay from a general look, though it might be missing some things that are needed in between each step for eeglab to work right. Try following the recommendations below:</div><div class="gmail_default" style="color:rgb(51,51,153)"><br></div><div class="gmail_default" style="color:rgb(51,51,153)">Have you had success running all the tutorial steps from the gui on the tutorial single-subject and/or study data ?</div><div class="gmail_default" style="color:rgb(51,51,153)"><br></div><div class="gmail_default" style="color:rgb(51,51,153)">Have you built your code based on what you got from eegh successfully running on tutorial data ? It's important to do that so you can see the necessary sequence for things to work in eeglab (and then building your script). Try making sure you tell eeglab to update the EEG structure. See EEG updates in the script that eeglab runs by typing eegh in command line after running a gui function.</div><div class="gmail_default" style="color:rgb(51,51,153)"><br></div><div class="gmail_default" style="color:rgb(51,51,153)">You may want to revisit each step with the gui, and also review the results of each step after you update the EEG.structure (in between steps). Alternatively, to debug better, you could save out a file at each step, and review the results after each step via the gui and the EEG.structure. </div><div class="gmail_default" style="color:rgb(51,51,153)"><br></div><div class="gmail_default" style="color:rgb(51,51,153)">Have you reviewed visually in the channel to head gui that your coordinate transform "<div class="gmail_default" style="font-family:calibri,arial,helvetica,sans-serif,emojifont,"apple color emoji","segoe ui emoji",notocoloremoji,"segoe ui symbol","android emoji",emojisymbols;font-size:16px;display:inline"></div><span style="color:rgb(0,0,0);font-family:calibri,arial,helvetica,sans-serif,emojifont,"apple color emoji","segoe ui emoji",notocoloremoji,"segoe ui symbol","android emoji",emojisymbols;font-size:16px">0 0 0 0 0 -1.5708 1 1 1" is correct ?</span></div><div class="gmail_default" style="color:rgb(51,51,153)"><br></div><div class="gmail_default" style="color:rgb(51,51,153)">...also <br></div><div class="gmail_default" style="color:rgb(51,51,153)"><br></div><div class="gmail_default" style="color:rgb(51,51,153)">Double-check that you're using recent matlab, recent or latest eeglab with clean matlab path, and have all necessary eeglab plugins properly loaded.</div><div class="gmail_default" style="color:rgb(51,51,153)">Check out Makoto's pipeline suggestions and the eeglab scripting tutorials if you have not had a chance to yet [though you probably have]<br></div><div class="gmail_default" style="color:rgb(51,51,153)">If you haven't had a chance to, it's important to review all eeglab tutorials, videos, and example articles in the literature.<br></div><div class="gmail_default" style="color:rgb(51,51,153)">*****************************************************************************************,<br></div><div class="gmail_default" style="color:rgb(51,51,153)"><br></div><div class="gmail_default" style="color:rgb(51,51,153)"><br></div><div class="gmail_default" style="color:rgb(51,51,153)"><br></div><div class="gmail_default" style="color:rgb(51,51,153)"><br></div><div class="gmail_default" style="color:rgb(51,51,153)"><br></div><div class="gmail_default" style="color:rgb(51,51,153)"><br></div><div class="gmail_extra"><br><div class="gmail_quote">On Mon, May 1, 2017 at 5:12 AM, m. kazanç <span dir="ltr"><<a href="mailto:mekazanc@hotmail.com" target="_blank">mekazanc@hotmail.com</a>></span> wrote:<br><blockquote class="gmail_quote" style="margin:0px 0px 0px 0.8ex;border-left:1px solid rgb(204,204,204);padding-left:1ex">
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<p>hello ,</p>
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<p>I have some problems related to EEGLAB Dipole fitting operation.</p>
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<p>My software and manuel result are totally different. In the attachement , I gave you my data and script , also I explain you manuel steps.</p>
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<p>Can you help me please , where is the wrong point(s) ? </p>
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<p>In manuel sections , </p>
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<p><span style="font-family:calibri,arial,helvetica,sans-serif"> </span></p>
<div><span style="font-family:calibri,arial,helvetica,sans-serif,emojifont,"apple color emoji","segoe ui emoji",notocoloremoji,"segoe ui symbol","android emoji",emojisymbols;font-size:16px"> After I opened; - EEG = eeglab;</span><br>
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<p>1- ) <span style="font-family:calibri,arial,helvetica,sans-serif,emojifont,"apple color emoji","segoe ui emoji",notocoloremoji,"segoe ui symbol","android emoji",emojisymbols;font-size:16px">EEG = pop_importdata('data',data,'<wbr>dataformat','array','srate',<wbr>sampRate,'nbchan',size(data,1)<wbr>,'pnts',size(data,2),'xmin',1,<wbr>'setname',subjectDir);
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<p>2 - ) <span style="font-family:calibri,arial,helvetica,sans-serif,emojifont,"apple color emoji","segoe ui emoji",notocoloremoji,"segoe ui symbol","android emoji",emojisymbols;font-size:16px"> EEG = pop_chanedit(EEG,'load',{<wbr>fullfile(root,'sagura19_eloc.<wbr>txt'),
'filetype', 'locs'});</span></p>
<p><span style="font-family:calibri,arial,helvetica,sans-serif,emojifont,"apple color emoji","segoe ui emoji",notocoloremoji,"segoe ui symbol","android emoji",emojisymbols;font-size:16px"><br>
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<p><span style="font-family:calibri,arial,helvetica,sans-serif,emojifont,"apple color emoji","segoe ui emoji",notocoloremoji,"segoe ui symbol","android emoji",emojisymbols;font-size:16px">3- ) <span style="font-family:calibri,arial,helvetica,sans-serif,emojifont,"apple color emoji","segoe ui emoji",notocoloremoji,"segoe ui symbol","android emoji",emojisymbols;font-size:16px">
EEG = pop_chanedit(EEG,'lookup',<wbr>fullfile(root2,'plugins','<wbr>dipfit2.3','standard_BEM','<wbr>elec','standard_1005.elc'),'<wbr>nosedir','+Y');</span></span></p>
<p><span style="font-family:calibri,arial,helvetica,sans-serif,emojifont,"apple color emoji","segoe ui emoji",notocoloremoji,"segoe ui symbol","android emoji",emojisymbols;font-size:16px"><span style="font-family:calibri,arial,helvetica,sans-serif,emojifont,"apple color emoji","segoe ui emoji",notocoloremoji,"segoe ui symbol","android emoji",emojisymbols;font-size:16px"><br>
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<p><span style="font-family:calibri,arial,helvetica,sans-serif,emojifont,"apple color emoji","segoe ui emoji",notocoloremoji,"segoe ui symbol","android emoji",emojisymbols;font-size:16px"><span style="font-family:calibri,arial,helvetica,sans-serif,emojifont,"apple color emoji","segoe ui emoji",notocoloremoji,"segoe ui symbol","android emoji",emojisymbols;font-size:16px">4
- ) <span style="font-family:calibri,arial,helvetica,sans-serif,emojifont,"apple color emoji","segoe ui emoji",notocoloremoji,"segoe ui symbol","android emoji",emojisymbols;font-size:16px">EEG = pop_runica(EEG,'icatype','<wbr>jader','options',{});</span></span></span></p>
<p><span style="font-family:calibri,arial,helvetica,sans-serif,emojifont,"apple color emoji","segoe ui emoji",notocoloremoji,"segoe ui symbol","android emoji",emojisymbols;font-size:16px"><span style="font-family:calibri,arial,helvetica,sans-serif,emojifont,"apple color emoji","segoe ui emoji",notocoloremoji,"segoe ui symbol","android emoji",emojisymbols;font-size:16px"><span style="font-family:calibri,arial,helvetica,sans-serif,emojifont,"apple color emoji","segoe ui emoji",notocoloremoji,"segoe ui symbol","android emoji",emojisymbols;font-size:16px"><br>
</span></span></span></p>
<p><span style="font-family:calibri,arial,helvetica,sans-serif,emojifont,"apple color emoji","segoe ui emoji",notocoloremoji,"segoe ui symbol","android emoji",emojisymbols;font-size:16px"><span style="font-family:calibri,arial,helvetica,sans-serif,emojifont,"apple color emoji","segoe ui emoji",notocoloremoji,"segoe ui symbol","android emoji",emojisymbols;font-size:16px"><span style="font-family:calibri,arial,helvetica,sans-serif,emojifont,"apple color emoji","segoe ui emoji",notocoloremoji,"segoe ui symbol","android emoji",emojisymbols;font-size:16px">5-
) <span style="font-family:calibri,arial,helvetica,sans-serif,emojifont,"apple color emoji","segoe ui emoji",notocoloremoji,"segoe ui symbol","android emoji",emojisymbols;font-size:16px"> EEG = pop_dipfit_settings(EEG,'<wbr>hdmfile', fullfile(root2,'plugins','<wbr>dipfit2.3','standard_BEM','<wbr>standard_vol.mat'),
'coordformat', 'MNI', 'mrifile', [root2 '\plugins\dipfit2.3\standard_<wbr>BEM\standard_mri.mat'], 'chanfile', [root2 '\plugins\dipfit2.3\standard_<wbr>BEM\elec\standard_1005.elc'], 'coord_transform',[</span></span></span></span></p><div class="gmail_default" style="color:rgb(51,51,153);display:inline"></div>0 0 0 0 0 -1.5708 1 1 1] , 'chansel',(1:numComps) ); <p></p>
<p><span style="font-family:calibri,arial,helvetica,sans-serif,emojifont,"apple color emoji","segoe ui emoji",notocoloremoji,"segoe ui symbol","android emoji",emojisymbols;font-size:16px"><span style="font-family:calibri,arial,helvetica,sans-serif,emojifont,"apple color emoji","segoe ui emoji",notocoloremoji,"segoe ui symbol","android emoji",emojisymbols;font-size:16px"><span style="font-family:calibri,arial,helvetica,sans-serif,emojifont,"apple color emoji","segoe ui emoji",notocoloremoji,"segoe ui symbol","android emoji",emojisymbols;font-size:16px"><span style="font-family:calibri,arial,helvetica,sans-serif,emojifont,"apple color emoji","segoe ui emoji",notocoloremoji,"segoe ui symbol","android emoji",emojisymbols;font-size:16px"><br>
</span></span></span></span></p>
<p><span style="font-family:calibri,arial,helvetica,sans-serif,emojifont,"apple color emoji","segoe ui emoji",notocoloremoji,"segoe ui symbol","android emoji",emojisymbols;font-size:16px"><span style="font-family:calibri,arial,helvetica,sans-serif,emojifont,"apple color emoji","segoe ui emoji",notocoloremoji,"segoe ui symbol","android emoji",emojisymbols;font-size:16px"><span style="font-family:calibri,arial,helvetica,sans-serif,emojifont,"apple color emoji","segoe ui emoji",notocoloremoji,"segoe ui symbol","android emoji",emojisymbols;font-size:16px"><span style="font-family:calibri,arial,helvetica,sans-serif,emojifont,"apple color emoji","segoe ui emoji",notocoloremoji,"segoe ui symbol","android emoji",emojisymbols;font-size:16px">6
- ) <span style="font-family:calibri,arial,helvetica,sans-serif,emojifont,"apple color emoji","segoe ui emoji",notocoloremoji,"segoe ui symbol","android emoji",emojisymbols;font-size:16px">EEG = pop_multifit(EEG,(1:numComps),<wbr>'threshold',15,'rmout','on','<wbr>plotopt',{'normlen','on'});</span></span></span></span></span></p>
<p><span style="font-family:calibri,arial,helvetica,sans-serif,emojifont,"apple color emoji","segoe ui emoji",notocoloremoji,"segoe ui symbol","android emoji",emojisymbols;font-size:16px"><span style="font-family:calibri,arial,helvetica,sans-serif,emojifont,"apple color emoji","segoe ui emoji",notocoloremoji,"segoe ui symbol","android emoji",emojisymbols;font-size:16px"><span style="font-family:calibri,arial,helvetica,sans-serif,emojifont,"apple color emoji","segoe ui emoji",notocoloremoji,"segoe ui symbol","android emoji",emojisymbols;font-size:16px"><span style="font-family:calibri,arial,helvetica,sans-serif,emojifont,"apple color emoji","segoe ui emoji",notocoloremoji,"segoe ui symbol","android emoji",emojisymbols;font-size:16px"><span style="font-family:calibri,arial,helvetica,sans-serif,emojifont,"apple color emoji","segoe ui emoji",notocoloremoji,"segoe ui symbol","android emoji",emojisymbols;font-size:16px"><br>
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pop_dipplot(EEG,[1:numComps numComps] , 'rvrange',[0 15] , 'mri', fullfile(root2,'plugins','<wbr>dipfit2.3','standard_BEM','<wbr>standard_mri.mat'),'num','on',<wbr>'normlen','on');</div>
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<div> Note: In DIPFIT tutorial , after 5th step , pop_dipfit_settings, 3rd step is coming ; but I choose it after loading of channels. Is it really important ?</div>
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<div>I finally ask you to learn if any problem in my code or manuel process stated above. This step is very cruical for our project due to we will model human behaviour according to active parts of the brain. </div>
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<div>Document at here : <a href="https://www.dropbox.com/sh/x6xw3gurxkc30ra/AABKLJqzBn9LmsVIHF4sx47Oa?dl=0" class="gmail-m_4021226615400971518OWAAutoLink" id="gmail-m_4021226615400971518LPlnk685577" target="_blank">https://www.dropbox.com/sh/<wbr>x6xw3gurxkc30ra/<wbr>AABKLJqzBn9LmsVIHF4sx47Oa?dl=0</a><wbr> </div>
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<div>I am looking forward your response </div>
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<div> Thank you very much </div>
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<p>Mehmet </p>
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