[Eeglablist] AMICA setup

Davida Streett davida_s2000 at yahoo.com
Tue Jul 25 17:38:53 PDT 2017


All,I wonder if there has been any further thoughts on this thread.  Like Jumana, I am trying to run AMICA and getting:
No W present, exiting
Reference to non-existent field 'W'.Error in runamica15 (line 873)
    weights = mods.W(:,:,1);Error in pop_runamica (line 239)
    [W,S,mods] = runamica15(datfile,arglist{:});
 
Error while evaluating uimenu Callback 
But I am getting this error message on two Windows 10 machines (with different types of processors but both 64 bits) and one Windows 7 machine.
Thanks for any help on this,Davida

      From: "Ahmad, Jumana" <jumana.ahmad at kcl.ac.uk>
 To: "'Murray, Nicholas P'" <MURRAYNI at ecu.edu>; "eeglablist at sccn.ucsd.edu" <eeglablist at sccn.ucsd.edu>; "japalmer at ucsd.edu" <japalmer at ucsd.edu> 
 Sent: Friday, February 10, 2017 1:26 AM
 Subject: Re: [Eeglablist] AMICA setup
   
#yiv6617619510 #yiv6617619510 -- _filtered #yiv6617619510 {font-family:Helvetica;panose-1:2 11 6 4 2 2 2 2 2 4;} _filtered #yiv6617619510 {panose-1:2 4 5 3 5 4 6 3 2 4;} _filtered #yiv6617619510 {font-family:Calibri;panose-1:2 15 5 2 2 2 4 3 2 4;} _filtered #yiv6617619510 {font-family:Tahoma;panose-1:2 11 6 4 3 5 4 4 2 4;} _filtered #yiv6617619510 {panose-1:2 11 6 3 2 2 2 2 2 4;}#yiv6617619510 #yiv6617619510 p.yiv6617619510MsoNormal, #yiv6617619510 li.yiv6617619510MsoNormal, #yiv6617619510 div.yiv6617619510MsoNormal {margin:0cm;margin-bottom:.0001pt;font-size:12.0pt;}#yiv6617619510 a:link, #yiv6617619510 span.yiv6617619510MsoHyperlink {color:blue;text-decoration:underline;}#yiv6617619510 a:visited, #yiv6617619510 span.yiv6617619510MsoHyperlinkFollowed {color:purple;text-decoration:underline;}#yiv6617619510 p {margin:0cm;margin-bottom:.0001pt;font-size:12.0pt;}#yiv6617619510 span.yiv6617619510EmailStyle18 {color:#1F497D;}#yiv6617619510 .yiv6617619510MsoChpDefault {font-size:10.0pt;} _filtered #yiv6617619510 {margin:72.0pt 72.0pt 72.0pt 72.0pt;}#yiv6617619510 div.yiv6617619510WordSection1 {}#yiv6617619510 Sorry, it is intel core i7.    From: Ahmad, Jumana
Sent: 09 February 2017 12:32
To: 'Murray, Nicholas P' <MURRAYNI at ecu.edu>; eeglablist at sccn.ucsd.edu; japalmer at ucsd.edu
Subject: Re: [Eeglablist] AMICA setup    It is 64 bit. Windows 8 The processor is intel 6th Generation Intel® Core™ i5 processor Thank you,     Jumana  ------------------------------------------ Jumana Ahmad Post-Doctoral Research Worker in Cognitive Neuroscience  EU-AIMS Longitudinal European Autism Project (LEAP) & SynaG Study Room M1.26.Department of Forensic and Neurodevelopmental Sciences (PO 23) | Institute of Psychiatry, Psychology & Neuroscience | King’s College London | 16 De Crespigny Park | London SE5 8AF   Phone: 0207 848 5359| Email: jumana.ahmad at kcl.ac.uk | Website: www.eu-aims.eu | Facebook: www.facebook.com/euaims    From: Jason Palmer <japalmer29 at gmail.com>
Sent: 09 February 2017 14:13:32
To: Ahmad, Jumana; 'Murray, Nicholas P'; eeglablist at sccn.ucsd.edu
Subject: RE: [Eeglablist] AMICA setup   Hi Jumana,   It does look like there is a compatibility issue with the binary and your work machine. I think it works under Windows 8 and Windows 10, but one possibility is that your work machine is 32 bit, and not 64 bit? The binary requires 64 bit architecture. If it is 64 bit, then there may be something about Windows 8, or some other incompatibility in the processor. Do you know which processor it is? AMD or Intel?   Best, Jason   From: Ahmad, Jumana [mailto:jumana.ahmad at kcl.ac.uk]
Sent: Thursday, February 09, 2017 8:24 PM
To: Murray, Nicholas P; eeglablist at sccn.ucsd.edu;japalmer at ucsd.edu
Subject: RE: [Eeglablist] AMICA setup   The IT department think it is because I am using windows 8. Could this be correct? Thanks, Jumana   From: Ahmad, Jumana
Sent: 08 February 2017 20:31
To: Murray, Nicholas P <MURRAYNI at ecu.edu>;eeglablist at sccn.ucsd.edu; japalmer at ucsd.edu
Subject: Re: [Eeglablist] AMICA setup   
Hi and thanks for your reply,
I actually downloaded the binary files recently from the website into the systems 32 folder. I use a windows computer. I'm concerned that as it's a work computer that it could be an access issue as the administrator had to help me save the files there- I do not have higher level administrator rights over the systems 32 folder. Is there anywhere else I can save the binary files?
Apart from adding the binary files and setting the matlab path to the new amica folder, is there anything else that I should be doing?
Best wishes,
Jumana 
------------------------------------------
Jumana Ahmad
Post-Doctoral Research Worker in Cognitive Neuroscience
EU-AIMS Longitudinal European Autism Project (LEAP) & SynaG Study
Room M1.26.Department of Forensic and Neurodevelopmental Sciences (PO 23) | Institute of Psychiatry, Psychology & Neuroscience | King’s College London | 16 De Crespigny Park | London SE5 8AF

Phone: 0207 848 5359| Email: jumana.ahmad at kcl.ac.uk | Website:www.eu-aims.eu | Facebook: www.facebook.com/euaims From: Murray, Nicholas P <MURRAYNI at ecu.edu>
Sent: 08 February 2017 21:05:33
To: Ahmad, Jumana
Subject: RE: [Eeglablist] AMICA setup    Jumana We had the same problem.  We updated the binary files found onhttps://sccn.ucsd.edu/~jason/amica_web.html While this seems to be a simple fix: the file path must not include spaces.  It corrected this problem and ran. Nick   From:eeglablist-bounces at sccn.ucsd.edu [mailto:eeglablist-bounces at sccn.ucsd.edu]On Behalf Of Ahmad, Jumana
Sent: Wednesday, February 08, 2017 12:59 PM
To: japalmer at ucsd.edu;eeglablist at sccn.ucsd.edu
Subject: Re: [Eeglablist] AMICA setup   Dear Jason, Thank you. I now instead get this error:   Reference to non-existent field 'W'.   Error in runamica15 (line 869)     weights = mods.W(:,:,1);   Error in ICA2_AMICA (line 112)     runamica15(data.data, 'num_chans', data.nbchan,...   Best wishes, Jumana   From: Jason Palmer [mailto:japalmer29 at gmail.com]
Sent: 04 February 2017 06:49
To: Ahmad, Jumana <jumana.ahmad at kcl.ac.uk>;eeglablist at sccn.ucsd.edu
Subject: RE: [Eeglablist] AMICA setup   Dear Jumana,   The variable AMBIN is set by checking whether the binary file is in the directory where the runamica15.m file is. Are you sure you have the amica15mkl.exe file in the amica1.5 plugin directory or whichever directory you have the runamica15.m file in?   Best, Jason   From:eeglablist-bounces at sccn.ucsd.edu [mailto:eeglablist-bounces at sccn.ucsd.edu]On Behalf Of Ahmad, Jumana
Sent: Saturday, February 04, 2017 7:26 AM
To: eeglablist at sccn.ucsd.edu
Subject: [Eeglablist] AMICA setup   Dear all, I have the following error when setting up AMICA:   Undefined function or variable 'AMBIN'.   Error in runamica15 (line 867)     system([AMBIN ' ' outdir 'input.param']);   Error in ICA2_AMICA (line 112)     runamica15(data.data, 'num_chans', data.nbchan,...   I set it up fine on my personal PC, but my work PC is giving this error. Could it be due to the windows32 folder access where I saved the binary files? Best wishes, Jumana   ------------------------------------------ Jumana Ahmad Post-Doctoral Research Worker in Cognitive Neuroscience  EU-AIMS Longitudinal European Autism Project (LEAP) & SynaG Study Room M1.09. Department of Forensic and Neurodevelopmental Sciences (PO 23) | Institute of Psychiatry, Psychology & Neuroscience | King’s College London | 16 De Crespigny Park | London SE5 8AF   Phone: 0207848 0260| Email: jumana.ahmad at kcl.ac.uk | Website: www.eu-aims.eu | Facebook: www.facebook.com/euaims   *************************************************************************************** *************************************************************************************** We are currently looking for volunteers with mild intellectual disability to be part of our exciting and world-leading European project into brain development and social behaviour. Please, do get in touch if you know of anyone who may be interested in taking part. *************************************************************************************** ***************************************************************************************   _______________________________________________
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