[Eeglablist] CleanLine & clean_rawdata plugins

Tarik S Bel-Bahar tarikbelbahar at gmail.com
Mon Aug 28 10:59:14 PDT 2017

Hello Rafal, notes below....

1. That does not sound unusual, I remember a pause when running cleanline
in the past. I doubt that it is freezing, it's probably just computing. You
may also want to grab newer versions of the function from the PREP toolbox
from mullen/kothe et al.

2. You don't need EOG for ICA, as frontal channels will pick up stereotyped
eye-artifacts anyway. So I would say if you want to use clean_rawdata, drop
EOG channels before running it. Also, just look at your ICA solutions doing
it different ways, you should not see much difference in eye-related
artifact ICs.

On Sat, Aug 26, 2017 at 8:21 PM, Rafał Jończyk <rafal.jonczyk at gmail.com>

> Dear all,
> I have two questions concerning the eeglab plugins: CleanLine &
> clean_rawdata.
> 1. CleanLine: for some reason or other when I run CleanLine on a dataset
> Matlab freezes for a good few minutes (ca. 10) before it starts the
> cleaning procedure, with the cleaning being very swift. I am currently
> using Matlab R2017a with the most recent version of eeglab. Has anyone
> experienced this problem before? This happens irrespective of whether I am
> using the GUI or the script.
> 2. Clean_rawdata: I am using this plugin solely to get rid of bad channels
> prior to re-referencing & subsequent ICA. It often happens that EOG
> channels get rejected during the procedure. Since I want to include the EOG
> channels for ICA (which I use mainly form eye artifacts removal), I am
> wondering what could yield better results:
> a) letting clean_rawdata do its job and in case EOG channels get removed
> running ICA without those channels.
> b) as in a) but interpolating EOG channels prior to ICA.
> b) running clean_rawdata on all channels except EOG channels so that they
> remain intact for ICA.
> I hope the above options makes sense. For now, option c) seems to be the
> most convincing and a) the least convincing to me.
> Thank you for your suggestions,
> Best,
> ​Raf.​
> --
> Rafał Jończyk
> Assistant Professor
> Faculty of English
> Adam Mickiewicz University, Poznań | Poland
> RG: https://www.researchgate.net/profile/Rafal_Jonczyk
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