[Eeglablist] Help with viewing output from ASR

Kelly Michaelis kcmichaelis at gmail.com
Thu Jul 19 11:01:38 PDT 2018


Dear list,

I'm fairly new to EEG, and I'm trying to implement ASR on my data, on which
I plan to perform time-frequency analyses. I have everything installed and
I've been following the ASR preprocssing pipeline recommended by Makoto.
<https://sccn.ucsd.edu/wiki/Makoto's_preprocessing_pipeline#Alternatively.2C_cleaning_continuous_data_using_ASR_.2803.2F16.2F2018_updated.29>
This
is on Mac OSSierra and I'm using EEGLAB v14_1_2b and Matlab 2016b.

I'm getting both the strjoin error with Cleanline that others have
reported, and I get a visartifacts error from ASR, meaning I can't view the
output from ASR to compare the original data with the ASR-cleaned data. I
have tried the published fixes I could find for these errors, and nothing
has worked. More details below.

1. Cleanline error: after installing Cleanline, any time I try to view a
variable in the matlab workspace by clicking on it, a dialog box pops up
that says

"readonly
Expected input to be one of these types:
char
Instead it's type was cell.
strjoin
14"


I have seen this posted here (
https://sccn.ucsd.edu/pipermail/eeglablist/2017/013003.html) and here (
https://sccn.ucsd.edu/bugzilla/show_bug.cgi?id=1793). The bugfix says to
add some code in cleanline at line 13, but if I open cleanline.m I don't
understand where to add this, as line 13 is all comments. What am I
missing?


2. ASR visartifacts error - the output is below. I have seen a couple posts
about similar errors, but haven't found a fix. Can someone help? If I
uncheck the last box in ASR ("show results for comparison) I don't get any
output and I'm not sure how to view the rejected vs. original data. Can
someone help?

OUTPUT:

Now doing final post-cleanup of the output.
Determining time window rejection thresholds...done.
Keeping 92.5% (3915 seconds) of the data.
eeg_insertbound(): 175 boundary (break) events added.
eeg_insertbound(): event latencies recomputed and 255 events removed.
Event resorted by increasing latencies.
Event resorted by increasing latencies.
Use vis_artifacts to compare the cleaned data to the original.
Undefined function or variable 'hFig'.

Error in vis_artifacts/on_resize (line 300)
        wPos = get(hFig,'Position');

Error in vis_artifacts/on_window_resized (line 311)
        on_resize();

Error using vis_artifacts (line 158)
Error while evaluating Figure SizeChangedFcn
You might see this error due to a behavior change in the ResizeFcn callback.
See ResizeFcn Returns Error After GUI Launches for more information.

Current plot held
Warning: vis_artifacts failed. Skipping visualization.
> In pop_clean_rawdata (line 129)
Done.


Thank you!
Kelly
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