[Eeglablist] Questions about topographic plot for all subjects and conditions (Makoto's Preprocessing Pipeline)

Sun Jun 7 09:37:03 PDT 2020

Dear Mahjabeen,

There is no ready-made code to perform statistics on this data and plot,
though it is not that hard.

Is this analysis for publication? If so, you add me to the author's list
and I can write code for you to perform what you want, unless it is beyond
my resource capacity available for you.

Makoto

On Sun, Jun 7, 2020 at 9:30 AM Mahjabeen Rahman <
mahjabeen.rahman at knights.ucf.edu> wrote:

> Yes I checked this code before. My question is for how can I get the level
> of significance and those areas in the brain (like the figures I attached
> before), is there any code without using STUDY design ? (I am sorry, not
> very good in coding).  With STUDY, I have some questions, which I mentioned
> in the original email.
>
> Thanks a lot.
> Mahjabeen
> ------------------------------
> *From:* eeglablist <eeglablist-bounces at sccn.ucsd.edu> on behalf of Makoto
> Miyakoshi <mmiyakoshi at ucsd.edu>
> *Sent:* Saturday, June 6, 2020 2:38 PM
> *To:* eeglablist at sccn.ucsd.edu <eeglablist at sccn.ucsd.edu>
> *Subject:* Re: [Eeglablist] Questions about topographic plot for all
> subjects and conditions (Makoto's Preprocessing Pipeline)
>
> Dear Mahjabeen,
>
> Yup I saw it. Have you check this code already?
>
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>
>
> Makoto
>
> On Sat, Jun 6, 2020 at 11:23 AM Mahjabeen Rahman <
> mahjabeen.rahman at knights.ucf.edu> wrote:
>
> > Hi Makoto,
> >
> > Thanks for your reply. I attached here again as a zipped folder. Can you
> > see them now ?
> >
> > Best,
> > Mahjabeen
> > ------------------------------
> > *From:* eeglablist <eeglablist-bounces at sccn.ucsd.edu> on behalf of
> Makoto
> > Miyakoshi <mmiyakoshi at ucsd.edu>
> > *Sent:* Saturday, June 6, 2020 1:17 PM
> > *To:* EEGLAB List <eeglablist at sccn.ucsd.edu>
> > *Subject:* Re: [Eeglablist] Questions about topographic plot for all
> > subjects and conditions (Makoto's Preprocessing Pipeline)
> >
> > Dear Mahjabeen,
> >
> > Unfortunately the attached figure you mention did not show up on the
> > screen. Most likely you have to write code to do it.
> > Send me the figure you tried to attach and I can give you more info.
> >
> > Makoto
> >
> > On Thu, Jun 4, 2020 at 3:01 AM Mahjabeen Rahman <
> > mahjabeen.rahman at knights.ucf.edu> wrote:
> >
> > > Hi fellow researchers,
> > >
> > > I am looking for creating topographic map for all subjects and all
> > > conditions with level of significance like the attached figures. My
> > > questions are,
> > >
> > >
> > >   1.  Does anyone have the codes to generate this topographic plots
> (like
> > > the attached) ? (If I don't want to use STUDY)
> > >   2.  If I use STUDY design, in that case, can I use the cleaned data
> > with
> > > manually rejected components ?  Also I found in Makoto's preprocessing,
> > >
> > > "When creating STUDY, I usually load all the .set files into EEGLAB
> using
> > > pop_loadset() with 'loadmode', 'info' (it may be possible to do it from
> > GUI
> > > too, but it is convenient to input EEG.subject and EEG.group altogether
> > at
> > > this point). Importantly, creating a STUDY cleans your data because it
> > > performs IC rejection based on the two criteria: 1) dipoles with > 15%
> > > residual variance--Artoni et al. (2014) showed (indirect) evidence of
> why
> > > this value is about optimum; 2) dipoles outside brain--no argument.
> This
> > is
> > > why you don't need to bother to manually reject ICs at the individual
> > > level."
> > >
> > > I already did the cleaning, hence asking.
> > >
> > > Thanks in advance,
> > >
> > > Mahjabeen Rahman
> > > PhD Student
> > > Industrial Engineering & Management Systems
> > > University of Central Florida
> > > _______________________________________________
> > > Eeglablist page:
> >
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