[Eeglablist] NSG test job data

Tim Curran tim.curran at colorado.edu
Fri Jan 1 15:00:46 PST 2021


I am trying to run the “The test job script” described in this NSG EEGLAB paper (p. 9, Appendix C):
https://urldefense.com/v3/__https://www.sciencedirect.com/science/article/pii/S1053811920302652__;!!Mih3wA!Q3XeD7yh5IWZyEbcJCJ7xxUaEXEQPRB5WHX-9pQOQp89-jPhpxnJmdsX-mybwtleI0GTUQ$ <https://urldefense.com/v3/__https:/www.sciencedirect.com/science/article/pii/S1053811920302652__;!!Mih3wA!QhrtWxTbg6FKRf0ATv8n7WAsZRM4VHN_xOjB6pPd30Nxm8TkinSZ6V8csSGHwedhYWujuA$>

>From here:
https://urldefense.com/v3/__https://github.com/sccn/nsgportal_manuscriptsupport/tree/master/wh_data__;!!Mih3wA!Q3XeD7yh5IWZyEbcJCJ7xxUaEXEQPRB5WHX-9pQOQp89-jPhpxnJmdsX-mybwtn9cRUdXg$ 
I downloaded the code needed to preprocess the data from the original fif file:
“sub-11_ses-meg_meg_sub-11_ses-meg_task-facerecognition_run-01_meg.fif”
to these EEGLAB files:
“wh_sub11_preproc.set” and “wh_sub11_preproc.fdt”

I am running into problems with the MNE toolbox functions needed to import the original data into EEGLAB.

I wonder if somebody could just share the
“wh_sub11_preproc.set” and “wh_sub11_preproc.fdt”
files with me?

Thanks
Tim


From: eeglabnews <eeglabnews-bounces at sccn.ucsd.edu> on behalf of "Delorme, Arnaud" <adelorme at ucsd.edu>
Date: Wednesday, November 4, 2020 at 6:59 PM
To: "eeglabnews at sccn.ucsd.edu" <eeglabnews at sccn.ucsd.edu>
Subject: [Eeglabnews] Virtual Training Webinar: Introduction to the Neuroscience Gateway Using EEGLAB; November 20, 2020; 9:30 AM - 12:30 PM US Pacific Time

Registration is free (but total registration is limited): https://www.sdsc.edu/event_items/202011_NSGwebinar.html

The Neuroscience Gateway (NSG<https://urldefense.com/v3/__https:/www.nsgportal.org/index.html__;!!Mih3wA!QhrtWxTbg6FKRf0ATv8n7WAsZRM4VHN_xOjB6pPd30Nxm8TkinSZ6V8csSGHweerU6T65w$>) enables large scale modeling and data processing research in neuroscience. NSG provides easy to use web portal based and programmatic access to supercomputing and high throughput computing resources. NSG is free and open to researchers and students. NSG provides about 20 widely used neuroscience software<https://urldefense.com/v3/__https:/www.nsgportal.org/software.html__;!!Mih3wA!QhrtWxTbg6FKRf0ATv8n7WAsZRM4VHN_xOjB6pPd30Nxm8TkinSZ6V8csSGHwec_uprwgQ$> for modeling, simulation, data processing, data analysis and machine learning optimally installed on supercomputing and high throughput computing resources.
Neuroscientists who plan to use NSG for their research, irrespective of which of the NSG-provided neuroscience software they may use, will find this webinar useful.

This webinar will provide training on how to use the NSG and its various features within the context of two widely used neuroscience software for modeling and data processing - NEURON and EEGLAB. The NEURON<https://urldefense.com/v3/__https:/neuron.yale.edu/neuron/__;!!Mih3wA!QhrtWxTbg6FKRf0ATv8n7WAsZRM4VHN_xOjB6pPd30Nxm8TkinSZ6V8csSGHwecxkrLwmA$> simulation environment is used by researchers and students worldwide for building and using computational models of neurons and networks of neurons. EEGLAB<https://sccn.ucsd.edu/eeglab/index.php> is an interactive Matlab toolbox for processing continuous and event-related EEG, MEG and other electrophysiological data incorporating independent component analysis (ICA), time/frequency analysis, artifact rejection, event-related statistics. We will also talk about a new supercomputer called Expanse<https://www.sdsc.edu/services/hpc/expanse/> that is becoming available to NSG for running these software.

NSG is funded by the US National Science Foundation and National Institutes of Health.

Agenda (listed in Pacific Time)

  *   9:30am - 9:50am: Introduction to NSG

     *   Amit Majumdar, Kenneth Yoshimoto, Subhashini Sivagnanam, San Diego Supercomputer Center, University of California San Diego

  *   9:50am - 10:10am: Demo of using NSG - via the portal and the programmatic REST access

     *   Subhashini Sivagnanam, San Diego Supercomputer Center, University of California San Diego

  *   10:10am - 10:35am: Introduction to NEURON

     *   Ted Carnevale, Department of Neurobiology, Yale University

  *   10:35am - 10:55am: Demo of using NSG for NEURON

     *   Ted Carnevale, Department of Neurobiology, Yale University

  *   10:55am - 11:10am: Break

  *   11:10am - 11:30am: Introduction to EEGLAB

     *   Arnaud Delorme, Swartz Center for Computational Neuroscience, University of California San Diego

  *   11:30am - 12:10pm: Demo of using NSG for EEGLAB

     *   Arnaud Delorme, Swartz Center for Computational Neuroscience, University of California San Diego

  *   12:10pm - 12:30pm: Q&A
For questions, please email nsghelp at sdsc.edu<mailto:nsghelp at sdsc.edu>

For more information about EEGLAB and NSG, see the links below

https://urldefense.com/v3/__https://github.com/sccn/nsgportal__;!!Mih3wA!Q3XeD7yh5IWZyEbcJCJ7xxUaEXEQPRB5WHX-9pQOQp89-jPhpxnJmdsX-mybwtmUOefn9g$ <https://urldefense.com/v3/__https:/github.com/sccn/nsgportal__;!!Mih3wA!QhrtWxTbg6FKRf0ATv8n7WAsZRM4VHN_xOjB6pPd30Nxm8TkinSZ6V8csSGHweenjMLfxg$>
https://urldefense.com/v3/__https://www.sciencedirect.com/science/article/pii/S1053811920302652__;!!Mih3wA!Q3XeD7yh5IWZyEbcJCJ7xxUaEXEQPRB5WHX-9pQOQp89-jPhpxnJmdsX-mybwtleI0GTUQ$ <https://urldefense.com/v3/__https:/www.sciencedirect.com/science/article/pii/S1053811920302652__;!!Mih3wA!QhrtWxTbg6FKRf0ATv8n7WAsZRM4VHN_xOjB6pPd30Nxm8TkinSZ6V8csSGHwedhYWujuA$>




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