[Eeglablist] amica

Coombes, Stephen A scoombes at ufl.edu
Mon Aug 30 12:02:37 PDT 2021


Hi All,

I have run into a problem running amica using the following code:


runamica15(EEG.data, 'num_chans', EEG.nbchan,'outdir', output_dir_amica ,'num_models', 1,'do_reject', 1,...
                    'numrej', 15, 'rejsig', 3, 'rejint', 1);
EEG.etc.amica  = loadmodout15(output_dir_amica);
EEG.etc.amica.S = EEG.etc.amica.S(1:EEG.etc.amica.num_pcs, :);
EEG.icaweights = EEG.etc.amica.W;
EEG.icasphere  = EEG.etc.amica.S;
EEG = eeg_checkset(EEG, 'ica');


I am running on Ubuntu 16.04 and get the following message:

/bin/bash: /media/mcuser/Partition2/eeglab2021.0/plugins/AMICA1.5.2/amica15c: Permission denied
Something went wrong...
No gm present, setting num_models to 1
No W present, exiting
Reference to non-existent field 'W'.

Error in runamica15 (line 892)
    weights = mods.W(:,:,1);

Error in LRNlab_restingEEG_preprocessing_v1_14 (line 259)
                runamica15(EEG.data, 'num_chans', EEG.nbchan,'outdir', output_dir_amica ,'num_models', 1,'do_reject', 1,...

Any suggestions? Amica will not run through GUI either.

Thanks
-Steve


__________
Stephen A. Coombes, Ph.D.
Laboratory for Rehabilitation Neuroscience
University of Florida
Phone: 352.294.1768
Website: lrnlab.org<https://urldefense.proofpoint.com/v2/url?u=http-3A__www.lrnlab.org_&d=DwIFAg&c=-35OiAkTchMrZOngvJPOeA&r=kB5f6DjXkuOQpM1bq5OFA9kKiQyNm1p6x6e36h3EglE&m=fVlGlwdSRfx1jJXupQSVENcralFWrPKJCWY0qX1m1uA&s=LCkY0evmxztYPq3AdTQqA11RPIikcxe5YN_cUgb_JMY&e= >



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