[Eeglablist] NFT plugin and RELICA to reproduce Acar and Makeig 2020 (BIBE)

Ceolini, E. (Enea) e.ceolini at fsw.leidenuniv.nl
Wed Sep 22 01:28:38 PDT 2021


Dear Zeynep,

Thanks for your response, I had already found that repo but I was wondering if there is some public code available to reproduce the pipeline that uses RELICA with the SCS localisation method, it seems the repo you point to has no mention of this RELICA integration.

Thanks in advance for your help and time.

+Enea
On 21 Sep 2021, 21:44 +0200, Zeynep Akalin Acar <zeynep at sccn.ucsd.edu>, wrote:
Here is the link:

https://urldefense.proofpoint.com/v2/url?u=https-3A__github.com_sccn_NFT-5Ftest&d=DwIGaQ&c=-35OiAkTchMrZOngvJPOeA&r=kB5f6DjXkuOQpM1bq5OFA9kKiQyNm1p6x6e36h3EglE&m=UgnNOq3qo2xV0m3DtktxVEW8nPnO1Wy31zHzsRdx4B8&s=9M2fpC-8tTHJUWPjI8Ds5z7ii9mY5Hx4bbWCbHFzHao&e= 

Thanks,
Zeynep

On Tue, Sep 21, 2021 at 10:53 AM Clement Lee via eeglablist <eeglablist at sccn.ucsd.edu<mailto:eeglablist at sccn.ucsd.edu>> wrote:
Hi Zeynep,

Is there a permalink to your NFT demo data, or could you please share a new
link with Ceolini here who is interested in replicating your pipeline?

Thanks,
Clement Lee
Applications Programmer
Swartz Center for Computational Neuroscience
Institute for Neural Computation, UC San Diego
858-822-7535


On Tue, Sep 21, 2021 at 7:57 AM Ceolini, E. (Enea) via eeglablist <
eeglablist at sccn.ucsd.edu<mailto:eeglablist at sccn.ucsd.edu>> wrote:

> Dear all
>
> I am very interested in reproducing the pipeline for source localisation
> that was proposed in this BIBE 2020 paper (
> https://urldefense.proofpoint.com/v2/url?u=https-3A__ieeexplore.ieee.org_document_9288020&d=DwIGaQ&c=-35OiAkTchMrZOngvJPOeA&r=kB5f6DjXkuOQpM1bq5OFA9kKiQyNm1p6x6e36h3EglE&m=wu9jYMcDx7y_who5XJ1_eUR2KnOXEiNP-qtcb6Dgd5c&s=xJkMBjxKxr7Bn6F_d_Rn9vQoPuk66k06Eu8HUfApYN0&e=
> ) by Acar and Makeig.
>
> In particular I am interested in reproducing the step described in Section
> II paragraph C were the authors used RELICA to estimate the noise
> covariance matrix for the subsequent SCS: “When we used the variance of ICs
> across the bootstrap clusters as the noise covariance matrix in SCS,..."
>
> I am following the paper and the associated slides from the EEGLAB
> workshop (
> https://sccn.ucsd.edu/githubwiki/files/eeglab2021_high_resolution_source_imaging.pdf)
> and I have located (almost) all of the components except for the demo
> folders that is cited at the end of the presentation. I think they are
> supposed to be available at this link (
> https://rdl-share.ucsd.edu/message/U7F0uMivgbGZJur64TXDac) but the link
> appears to be broken.
>
> I believe the demo could really help me understand how to interface the
> RELICA output with the NFT plugin and in particular with the SCS method.
> Could anyone help me locate these demo?
>
> Thank you in advance for your time and your help,
>
> Best regards,
>
> +Enea
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