[Eeglablist] Announcing GEDAI: A new EEGLAB Plugin for unsupervised artifact correction

Ros, Tomas dr.t.ros at gmail.com
Wed Nov 12 05:08:49 PST 2025 

Hi George,

I have identified the problem.

The GEDAI.m arguments block syntax will not work in MATLAB 2018. The
arguments block for function argument validation was introduced in *MATLAB
R2019b*.

Hence, I have modified the *GEDAI v1.2* github code (and also the one
available through the EEGLAB Extension Manager) to now be compatible with
earlier Matlab versions.

Please repeat the same steps as previously advised and let me know if it
works 🤞

Cheers, Tomas
▬▬▬


*Tomas Ros, PhD*

Lecturer, Department of Clinical Neurosciences
Research Staff Scientist, CIBM EEG HUG-UNIGE Section
University of Geneva, Switzerland
https://urldefense.com/v3/__https://www.tomasros.com/__;!!Mih3wA!DMtaXpoo5xindK1j8X370B1oPVN7ziO2lMje2IEJgOsRUmQvweObOOf-1hCRKK6DDFfZhZMjbs4pEYknuvpxyw$ 

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On Wed, 12 Nov 2025 at 13:29, George Papaioannou <gpthespies at gmail.com>
wrote:

> (corrected message)
> Hi Tomas
>
> Thanks a lot for your response and the instructions you provided to me.
> I erased the previous GEDAI plugin, and I used the Manage EEGLAB
> extensions. Ok the GEDAI v1.2 loaded in the plugins.
> Then I tried to apply the tool on one of the 'dirty' data you have
> provided.  I am using MATLAB ver.2018b, and eeglab2025.1 (latest version).
> Unfortunately, I still got the following error:
>
>  Error: File: GEDAI.m Line: 95 Column: 1
> This statement is not inside any function.
>  (It follows the END that terminates the definition of the function
> "GEDAI".)
>
> Error in pop_GEDAI (line 61)
>         [EEG, ~, ~,~, ~, com] =
> GEDAI(EEG,artifact_threshold,epoch_size_in_cycles,
>         lowcut_frequency,ref_matrix_type,use_parallel,visualize_artifacts);
>
> Error while evaluating Menu Callback.
>
> Please, help me correct this problem, I really want to use youy tool in my
> data
>
> Best regards
>
> George Papaioannou, PhD
> CRANS, University of Patras, Patra, Greece
>
> On Wed, 12 Nov 2025 at 14:39, George Papaioannou <gpthespies at gmail.com>
> wrote:
>
>> Hi Tomas
>>
>> Thanks a lot for your response and the instructions you provided to me.
>> I erased the previous GEDAI plugin, and I used the Manage EEGLAB
>> extensions. Ok the GEDAI v1.2 loaded in the plugins.
>> Then I tried to apply the tool on one of the 'dirty' data you have
>> provided.  I am using MATLAB ver.2028b, and eeglab2025.1 (latest version).
>> Unfortunately, I still got the following error:
>>
>>  Error: File: GEDAI.m Line: 95 Column: 1
>> This statement is not inside any function.
>>  (It follows the END that terminates the definition of the function
>> "GEDAI".)
>>
>> Error in pop_GEDAI (line 61)
>>         [EEG, ~, ~,~, ~, com] =
>> GEDAI(EEG,artifact_threshold,epoch_size_in_cycles,
>>
>> lowcut_frequency,ref_matrix_type,use_parallel,visualize_artifacts);
>>
>> Error while evaluating Menu Callback.
>>
>> Please, help me correct this problem, I really want to use youy tool in
>> my data
>>
>> Best regards
>>
>> George Papaioannou, PhD
>> CRANS, University of Patras, Patra, Greece
>>
>>
>> On Wed, 12 Nov 2025 at 14:09, George Papaioannou <gpthespies at gmail.com>
>> wrote:
>>
>>> I will try it.
>>>
>>> Thanks a lot
>>> George Papaioannou
>>>
>>> On Tue, 11 Nov 2025 at 22:04, Ros, Tomas <dr.t.ros at gmail.com> wrote:
>>>
>>>> Hi George,
>>>>
>>>> I am not getting the same error. Please navigate to the plugins
>>>> subfolder of your Matlab eeglab installation and delete all (potentially
>>>> duplicate) versions of GEDAI. Then reinstall GEDAI through the GUI via File
>>>> --> Manage EEGLAB Extensions.
>>>>
>>>> Please let me know if that resolves the problem.
>>>>
>>>> All the best,
>>>> Tomas
>>>>
>>>> ▬▬▬
>>>>
>>>> *Tomas Ros, PhD*
>>>>
>>>> Lecturer, Department of Clinical Neurosciences
>>>> Research Staff Scientist, CIBM EEG HUG-UNIGE Section
>>>> University of Geneva, Switzerland
>>>> https://urldefense.com/v3/__https://www.tomasros.com/__;!!Mih3wA!DMtaXpoo5xindK1j8X370B1oPVN7ziO2lMje2IEJgOsRUmQvweObOOf-1hCRKK6DDFfZhZMjbs4pEYknuvpxyw$ 
>>>>
>>>> [image: CIBM logo]
>>>>
>>>>
>>>> *Clinical and Translational Neuroimaging*
>>>>
>>>> UNIGE Campus Biotech
>>>>
>>>> 9 Chemin des Mines
>>>>
>>>> CH - 1202 Genève, Switzerland
>>>>
>>>>
>>>> (+41) 0766 158 863
>>>>
>>>>
>>>>
>>>> cibm.ch <https://urldefense.com/v3/__http://www.cibm.ch/__;!!Mih3wA!DMtaXpoo5xindK1j8X370B1oPVN7ziO2lMje2IEJgOsRUmQvweObOOf-1hCRKK6DDFfZhZMjbs4pEYlge01PWA$ >
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>>>>
>>>>
>>>>
>>>>
>>>>
>>>>
>>>> On Tue, 11 Nov 2025 at 20:53, George Papaioannou via eeglablist <
>>>> eeglablist at sccn.ucsd.edu> wrote:
>>>>
>>>>> Dear colleagues
>>>>>
>>>>> I downloaded the GEDAI pugin, following all instructions on how to run
>>>>> it.
>>>>> When I run it I get the following error: Error: File: GEDAI.m Line: 95
>>>>> Column: 1
>>>>> This statement is not inside any function.
>>>>>  (It follows the END that terminates the definition of the function
>>>>> "GEDAI".)
>>>>>
>>>>> Could you please fix the problem in the script of the function ?
>>>>>
>>>>> Best regards
>>>>>
>>>>> Dr G. Papaioannou, PhD
>>>>>
>>>>>
>>>>> On Sun, 9 Nov 2025 at 02:36, Makoto Miyakoshi via eeglablist <
>>>>> eeglablist at sccn.ucsd.edu> wrote:
>>>>>
>>>>> > Hi Tomas,
>>>>> >
>>>>> > Using a forward model in defining 'clean' brain signals is a great
>>>>> idea.
>>>>> > The idea reminds me of REST by Dezhong Yao.
>>>>> > Though I still need to read details, intuitively I think this could
>>>>> be a
>>>>> > better way to go than ASR.
>>>>> >
>>>>> > Makoto
>>>>> >
>>>>> > On Mon, Oct 20, 2025 at 8:59 PM Tomas Ros via eeglablist <
>>>>> > eeglablist at sccn.ucsd.edu> wrote:
>>>>> >
>>>>> > > Dear EEGLAB community,
>>>>> > > We are writing to announce our new plugin, the Generalized
>>>>> Eigenvalue
>>>>> > > De-Artifacting Instrument (GEDAI), which is now available in the
>>>>> > Extension
>>>>> > > Manager.
>>>>> > > GEDAI was developed to provide robust and rapid artifact removal,
>>>>> even
>>>>> > for
>>>>> > > highly contaminated data, without requiring user supervision. It
>>>>> > introduces
>>>>> > > a novel approach called "leadfield filtering," which uses a
>>>>> theoretical
>>>>> > EEG
>>>>> > > forward model to separate brain activity from artifacts.
>>>>> > > GEDAI was designed to address key limitations of current ICA- or
>>>>> PCA-
>>>>> > > based denoising, such as speed, challenging artifact mixtures, or
>>>>> need
>>>>> > for
>>>>> > > calibration data.
>>>>> > > Our benchmark tests<
>>>>> > >
>>>>> >
>>>>> https://urldefense.com/v3/__https://www.biorxiv.org/content/10.1101/2025.10.04.680449v1__;!!Mih3wA!AUK0DyQeIgIlJl7UGbrzSjRIorBGG-rXomeQ_Z4PbNBQiWBRFkCrHDO-8gYgLImNW83Yh6iO78ayvq0yjDaFEJxo2w$
>>>>> > > > using real-world data indicate that GEDAI preprocessing can
>>>>> result in
>>>>> > > more accurate neurobehavioral prediction compared to competing
>>>>> methods.
>>>>> > > Nevertheless, it has not been tested under all EEG scenarios and
>>>>> we would
>>>>> > > welcome both positive and negative feedback on its performance.
>>>>> > > You can also download the plugin and find its documentation here:
>>>>> > >
>>>>> >
>>>>> https://urldefense.com/v3/__https://neurotuning.github.io/GEDAI-master/__;!!Mih3wA!AUK0DyQeIgIlJl7UGbrzSjRIorBGG-rXomeQ_Z4PbNBQiWBRFkCrHDO-8gYgLImNW83Yh6iO78ayvq0yjDYaj2FnGg$
>>>>> > > <
>>>>> > >
>>>>> >
>>>>> https://urldefense.com/v3/__https://github.com/neurotuning/GEDAI-master__;!!Mih3wA!AUK0DyQeIgIlJl7UGbrzSjRIorBGG-rXomeQ_Z4PbNBQiWBRFkCrHDO-8gYgLImNW83Yh6iO78ayvq0yjDYf-A47VA$
>>>>> > > >
>>>>> > > We hope GEDAI becomes a valuable tool for the community.
>>>>> > > Best regards,
>>>>> > > the GEDAI development team
>>>>> > >
>>>>> > > ▬▬▬
>>>>> > >
>>>>> > >
>>>>> > > Tomas Ros, PhD
>>>>> > >
>>>>> > > Lecturer, Department of Clinical Neurosciences
>>>>> > >
>>>>> > > Research Staff Scientist, CIBM EEG HUG-UNIGE Section
>>>>> > > University of Geneva, Switzerland
>>>>> > >
>>>>> > >
>>>>> >
>>>>> https://urldefense.com/v3/__https://www.tomasros.com/__;!!Mih3wA!AUK0DyQeIgIlJl7UGbrzSjRIorBGG-rXomeQ_Z4PbNBQiWBRFkCrHDO-8gYgLImNW83Yh6iO78ayvq0yjDZ-36KFHg$
>>>>> > >
>>>>> > > [CIBM logo]
>>>>> > >
>>>>> > > Clinical and Translational Neuroimaging
>>>>> > >
>>>>> > > UNIGE Campus Biotech
>>>>> > >
>>>>> > > 9 Chemin des Mines
>>>>> > >
>>>>> > > CH - 1202 Genève, Switzerland
>>>>> > >
>>>>> > > (+41) 0766 158 863
>>>>> > >
>>>>> > >
>>>>> > >
>>>>> > > cibm.ch<
>>>>> > >
>>>>> >
>>>>> https://urldefense.com/v3/__http://www.cibm.ch/__;!!Mih3wA!AUK0DyQeIgIlJl7UGbrzSjRIorBGG-rXomeQ_Z4PbNBQiWBRFkCrHDO-8gYgLImNW83Yh6iO78ayvq0yjDZzuwrnAw$
>>>>> > > >
>>>>> > >
>>>>> > > Follow us:  [Twitter] <
>>>>> > >
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>>>>> > > >
>>>>> > >
>>>>> > >
>>>>> > >
>>>>> > > _______________________________________________
>>>>> > > To unsubscribe, send an empty email to
>>>>> > > eeglablist-unsubscribe at sccn.ucsd.edu or visit
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>>>>> > _______________________________________________
>>>>> > To unsubscribe, send an empty email to
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>>>>> _______________________________________________
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>>>>> https://sccn.ucsd.edu/mailman/listinfo/eeglablist .
>>>>
>>>> ▬▬▬

*Tomas Ros, PhD*

Lecturer, Department of Clinical Neurosciences
Research Staff Scientist, CIBM EEG HUG-UNIGE Section
University of Geneva, Switzerland
https://urldefense.com/v3/__https://www.tomasros.com/__;!!Mih3wA!DMtaXpoo5xindK1j8X370B1oPVN7ziO2lMje2IEJgOsRUmQvweObOOf-1hCRKK6DDFfZhZMjbs4pEYknuvpxyw$ 

[image: CIBM logo]


*Clinical and Translational Neuroimaging*

UNIGE Campus Biotech

9 Chemin des Mines

CH - 1202 Genève, Switzerland


(+41) 0766 158 863



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On Tue, 11 Nov 2025 at 20:53, George Papaioannou via eeglablist <
eeglablist at sccn.ucsd.edu> wrote:

> Dear colleagues
>
> I downloaded the GEDAI pugin, following all instructions on how to run it.
> When I run it I get the following error: Error: File: GEDAI.m Line: 95
> Column: 1
> This statement is not inside any function.
>  (It follows the END that terminates the definition of the function
> "GEDAI".)
>
> Could you please fix the problem in the script of the function ?
>
> Best regards
>
> Dr G. Papaioannou, PhD
>
>
> On Sun, 9 Nov 2025 at 02:36, Makoto Miyakoshi via eeglablist <
> eeglablist at sccn.ucsd.edu> wrote:
>
> > Hi Tomas,
> >
> > Using a forward model in defining 'clean' brain signals is a great idea.
> > The idea reminds me of REST by Dezhong Yao.
> > Though I still need to read details, intuitively I think this could be a
> > better way to go than ASR.
> >
> > Makoto
> >
> > On Mon, Oct 20, 2025 at 8:59 PM Tomas Ros via eeglablist <
> > eeglablist at sccn.ucsd.edu> wrote:
> >
> > > Dear EEGLAB community,
> > > We are writing to announce our new plugin, the Generalized Eigenvalue
> > > De-Artifacting Instrument (GEDAI), which is now available in the
> > Extension
> > > Manager.
> > > GEDAI was developed to provide robust and rapid artifact removal, even
> > for
> > > highly contaminated data, without requiring user supervision. It
> > introduces
> > > a novel approach called "leadfield filtering," which uses a theoretical
> > EEG
> > > forward model to separate brain activity from artifacts.
> > > GEDAI was designed to address key limitations of current ICA- or PCA-
> > > based denoising, such as speed, challenging artifact mixtures, or need
> > for
> > > calibration data.
> > > Our benchmark tests<
> > >
> >
> https://urldefense.com/v3/__https://www.biorxiv.org/content/10.1101/2025.10.04.680449v1__;!!Mih3wA!AUK0DyQeIgIlJl7UGbrzSjRIorBGG-rXomeQ_Z4PbNBQiWBRFkCrHDO-8gYgLImNW83Yh6iO78ayvq0yjDaFEJxo2w$
> > > > using real-world data indicate that GEDAI preprocessing can result in
> > > more accurate neurobehavioral prediction compared to competing methods.
> > > Nevertheless, it has not been tested under all EEG scenarios and we
> would
> > > welcome both positive and negative feedback on its performance.
> > > You can also download the plugin and find its documentation here:
> > >
> >
> https://urldefense.com/v3/__https://neurotuning.github.io/GEDAI-master/__;!!Mih3wA!AUK0DyQeIgIlJl7UGbrzSjRIorBGG-rXomeQ_Z4PbNBQiWBRFkCrHDO-8gYgLImNW83Yh6iO78ayvq0yjDYaj2FnGg$
> > > <
> > >
> >
> https://urldefense.com/v3/__https://github.com/neurotuning/GEDAI-master__;!!Mih3wA!AUK0DyQeIgIlJl7UGbrzSjRIorBGG-rXomeQ_Z4PbNBQiWBRFkCrHDO-8gYgLImNW83Yh6iO78ayvq0yjDYf-A47VA$
> > > >
> > > We hope GEDAI becomes a valuable tool for the community.
> > > Best regards,
> > > the GEDAI development team
> > >
> > > ▬▬▬
> > >
> > >
> > > Tomas Ros, PhD
> > >
> > > Lecturer, Department of Clinical Neurosciences
> > >
> > > Research Staff Scientist, CIBM EEG HUG-UNIGE Section
> > > University of Geneva, Switzerland
> > >
> > >
> >
> https://urldefense.com/v3/__https://www.tomasros.com/__;!!Mih3wA!AUK0DyQeIgIlJl7UGbrzSjRIorBGG-rXomeQ_Z4PbNBQiWBRFkCrHDO-8gYgLImNW83Yh6iO78ayvq0yjDZ-36KFHg$
> > >
> > > [CIBM logo]
> > >
> > > Clinical and Translational Neuroimaging
> > >
> > > UNIGE Campus Biotech
> > >
> > > 9 Chemin des Mines
> > >
> > > CH - 1202 Genève, Switzerland
> > >
> > > (+41) 0766 158 863
> > >
> > >
> > >
> > > cibm.ch<
> > >
> >
> https://urldefense.com/v3/__http://www.cibm.ch/__;!!Mih3wA!AUK0DyQeIgIlJl7UGbrzSjRIorBGG-rXomeQ_Z4PbNBQiWBRFkCrHDO-8gYgLImNW83Yh6iO78ayvq0yjDZzuwrnAw$
> > > >
> > >
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> > >
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> > >
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> > > >
> > >
> > >
> > >
> > > _______________________________________________
> > > To unsubscribe, send an empty email to
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