[Eeglablist] ERSP baseline from command line - STUDY

Makoto Miyakoshi mmiyakoshi at ucsd.edu
Fri Nov 16 20:32:18 PST 2012


Dear Muhammad,

If you mean EPSRC as ERSP, the default baseline is all 0< latency
datapoints. For changing this, see newtimef help by typing 'help newtimef'.
You'll find following explanation. I think wavelet transform function in
STUDY precomputation accepts options for newtimef, so please try it.

        'baseline'  = Spectral baseline end-time (in ms). NaN --> no
baseline is used.
                      A [min max] range may also be entered
                      You may also enter one row per region for baseline
                      e.g. [0 100; 300 400] considers the window 0 to 100
ms and
                      300 to 400 ms This parameter validly defines all
baseline types
                      below. Again, [NaN] Prevent baseline subtraction.
                      {default: 0 -> all negative time values}.

Makoto

2012/11/9 M Abul Hassan <abulhassan85 at yahoo.com>

> Dear all
>
> I made a STUDY among ‘g’ groups and ‘c’ conditions and want to calculate
> EPSRC. My understanding is that the default baseline value is taken  from
> a period 0 to 1s before the cue. How can I re-define the baseline value
> (which function should I use in the command line)?  Thanks
>
> Best Regards
>
> Muhammad Abul Hasan
>
>
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-- 
Makoto Miyakoshi
JSPS Postdoctral Fellow for Research Abroad
Swartz Center for Computational Neuroscience
Institute for Neural Computation, University of California San Diego
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