[Eeglablist] Running ICA without the GUI

[liad.glz at gmail.com]

Thank you all very much. It's a big help. 

Liad

Sent from my iPhone

On 23 באוק 2013, at 13:41, Stephen Politzer-Ahles <politzerahless at gmail.com> wrote:

> You can find the code for inspecting components in the same way--in the GUI select Plot > Component Maps > 2-D, then use EEG.history or eegh to find the command associated with that makes those plots. Then after deciding what components you want to reject, you can give the component numbers to another command (which you can also find through the GUI) which rejects components.
> 
> Best,
> Steve
> 
> 
> 
> Stephen Politzer-Ahles
> New York University, Abu Dhabi
> Neuroscience of Language Lab
> http://www.nyu.edu/projects/politzer-ahles/
> 
> 
> On Wed, Oct 23, 2013 at 6:36 PM, <liad.glz at gmail.com> wrote:
>> Thank you Bethel. Did is what I already did. My questions refers to inspecting the components now, after saving the data set. Can i do it wothout a GUI? Should I just use topoplot, inspect the figures and rejects the bad components with another command? My question refers to the components inspection part - can that be done without the GUI?
>> 
>> Liad
>> 
>> Sent from my iPhone
>> 
>> On 21 באוק 2013, at 14:49, Bethel Osuagwu <b.osuagwu.1 at research.gla.ac.uk> wrote:
>> 
>>> Hi Liad
>>> Run ICA from the GUI and when it finishes type EEG.history in the matlab's command prompt to see a line similar to this:
>>> EEG = pop_runica(EEG, 'extended',1,'stop',1e-07,'interupt','on');
>>> This is the line you will need to run the script outside the GUI.
>>> 
>>> Also make sure you save the dataset after the ICA. Once the dataset is saved, you should be able to move the dataset to another computer to continue processing the ICA.
>>> The line to save the dataset outside the GUI looks like this:
>>> EEG = pop_saveset( EEG, 'filename','EEG_ica.set','filepath','C:\myEEG');
>>> 
>>> I hope this helps.
>>> Bethel
>>> 
>>> ________________________________________
>>> From: eeglablist-bounces at sccn.ucsd.edu [eeglablist-bounces at sccn.ucsd.edu] On Behalf Of liad glz [liad.glz at gmail.com]
>>> Sent: 20 October 2013 01:53
>>> To: eeglablist at sccn.ucsd.edu
>>> Subject: [Eeglablist] Running ICA without the GUI
>>> 
>>> Hello,
>>> 
>>> I want to first run the ICA on my computer, then save the output so I could inspect the components separately (on another computer), decide which ones to reject and run the rejection procedure. I know how it is done with the GUI, but I was not sure how to do it without it. I couldn't find in the Wiki what would be the function that would present the components so I could reject them after I run the runica.m, and what is the input this function would need, and the runica.m one generates? Are the weights enough, or do I need to save all the output components (weights,sphere,compvars,bias,signs,lrates,activations)?
>>> 
>>> Many thanks for your help
>>> Liad
>> 
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