[Eeglablist] Why doesn't BINICA show up as an option in ICA?

[Jacob Anderson]

Dear Makoto,
>From the Wiki BINICA page under the "Download" head, it looks like a recent
compiled version (with improved PCA reduction) for Windows isn't available.
It goes on to say that the older compiled versions won't run within MATLAB
and can't be used with binica.m(). However, one can download those older
versions to run them externally. The code you provided to Natalie and her
successful efforts to run BINICA (in Win8) suggest that you can actually
run BINICA within MATLAB on recent versions of Windows, which is cool!  I
was wondering if the version Natalie was using is the version from the wiki
page or if someone compiled a new one with the provided source code.
Natalie mentioned that she inherited the version she's using and doesn't
know much about its origins.
Cheers,
Jake



On Mon, May 12, 2014 at 10:52 AM, Makoto Miyakoshi <mmiyakoshi at ucsd.edu>wrote:

> Dear Jake,
>
> At least I haven't heard of any problem yet. Is there a binica problem
> depending on windows versions?
>
> Makoto
>
>
> 2014-05-11 19:22 GMT-07:00 Jacob Anderson <ande2523 at umn.edu>:
>
> Hi Everyone,
>> Will the older Windows binary work on Windows 7 machines? I'm assuming
>> that Natalie isn't running XP. The only Windows version I know of is on
>> BINICA wiki page. Is there another version that's available?
>>
>> Thanks,
>> Jake
>> On May 8, 2014 5:18 PM, "Natalie Prowse" <NatalieProwse at cmail.carleton.ca>
>> wrote:
>>
>>>  ​Thank-you Makoto.  I have logged the bug (1604) and am using your
>>> work around.
>>>
>>>
>>>  regards,
>>>
>>> -Natalie
>>>  ------------------------------
>>> *From:* Makoto Miyakoshi <mmiyakoshi at ucsd.edu>
>>> *Sent:* Thursday, May 8, 2014 12:44 PM
>>> *To:* Natalie Prowse
>>> *Cc:* eeglablist at sccn.ucsd.edu
>>> *Subject:* Re: [Eeglablist] Why doesn't BINICA show up as an option in
>>> ICA?
>>>
>>>  Dear Natalie,
>>>
>>>  Sorry for inconvenience.
>>> I'd like to give you a temporal solution using a command line meanwhile
>>> you post it as a bug to bugzilla
>>> https://sccn.ucsd.edu/bugzilla/enter_bug.cgi
>>>
>>>  After loading the set file you want to decompose, run the following
>>> command.
>>>
>>>  [wts,sph] = binica(EEG.data(:,:), 'extended', 1);
>>> EEG.icaweights = wts;
>>> EEG.icasphere = sph;
>>> EEG = eeg_checkset(EEG, 'ica');
>>> eeglab redraw
>>>
>>>  Makoto
>>>
>>>
>>> 2014-04-30 11:59 GMT-07:00 Natalie Prowse <
>>> NatalieProwse at cmail.carleton.ca>:
>>>
>>>> Hi,
>>>>
>>>> I have the windows version of BINICA on my C: drive.
>>>>
>>>> I have verified that the PATH variable contains the path to the file:
>>>> C:\NICERLAB\Artifact_removal_code\BinICA
>>>>
>>>> I have verified that in the eeglab install
>>>> \functions\sigprocfunc\icadefs.m the ICABINARY variable is properly set:
>>>> ICABINARY = 'C:\NICERLAB\Artifact_removal_code\BinICA\ica.exe';
>>>>
>>>> And yet, after loading a Brain Vision file and then clicking on
>>>> Tools->Run ICA  I do not always get presented with BINICA as an option.  I
>>>> also have FASTICA installed, and it doesn't show up either.  This is RANDOM
>>>> - sometimes I see BINICA in the list, but more often times, I don't.  I
>>>> cannot pinpoint what is different when it's working vs not.
>>>>
>>>> Any ideas what could be interfering with EEGLab's ability to display
>>>> the BINICA or FASTICA option to me?
>>>>
>>>> Thanks,
>>>> -Natalie
>>>> _______________________________________________
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>>>
>>>
>>>
>>>  --
>>> Makoto Miyakoshi
>>> Swartz Center for Computational Neuroscience
>>> Institute for Neural Computation, University of California San Diego
>>>
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>>
>
>
> --
> Makoto Miyakoshi
> Swartz Center for Computational Neuroscience
> Institute for Neural Computation, University of California San Diego
>
> --
> *************************************************
> Jacob E. Anderson, MA
> Doctoral Student
> Institute of Child Development
> 51 East River Rd.
> Minneapolis, MN  55455
>
> E-mail: jea at umn.edu
> Web: Click Here<http://www.cehd.umn.edu/icd/people/gradstudents/andersonJ.html>
> Cell:    763-458-7152
>
>
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