[Eeglablist] Filter causality pop_eegfiltnew

Gabriele Trotta trotta_gabriele at yahoo.com
Fri Jan 17 01:43:21 PST 2014


Dear Vito,
in general, the 50Hz frequency can be removed by means of a Notch filter
 in the pre-processing stage. Matlab easily implement such a filter!


http://www.mathworks.com/matlabcentral/newsreader/view_thread/292960




Il Venerdì 17 Gennaio 2014 5:24, robert coben <drcoben at gmail.com> ha scritto:
 
Is Tim’s workshop available online?

thx

Rob


On Jan 15, 2014, at 6:04 PM, Makoto Miyakoshi <mmiyakoshi at ucsd.edu> wrote:

Dear Vito,
>
>
>> the acausal filtering destroy the causality flow. For Granger it is important to use only causal filter.
>
>
>
>Oh really. That sounds counterintuitive to me. Please send me the URL to the paper about it.
>
>
>However let me tell you this that Tim Mullen (the author of SIFT) told us in the past EEGLAB workshop that we should not use ANY filter for SIFT. If you want to remove low-frequency drifts etc... he recommended the detrend option supported in SIFT. For low-pass filter, he said don't use it. Also make sure that you use double precision, not signle precision; check EEGLAB option to switch it (default should be single precision). Actually these were new things I learned!
>
>
>Condro, for clarification to novice users, let me add this that EEGLAB's FIR filter is by default non-causal (i.e. peak latencies do not shift).
>
>
>Makoto
>
>
>
>2014/1/15 Vito de Feo <vito.defeo at zmnh.uni-hamburg.de>
>
> 
>>Dear Makoto,
>>
>>the acausal filtering destroy the causality flow. For Granger it is important to use only causal filter. If you are interested I can send you a paper about that.
>>
>>Yes, I know SIFT and I am also using it for my analisys.
>>
>>
>>Vito
>>
>>Quoting Makoto Miyakoshi <mmiyakoshi at ucsd.edu>:
>>
>>
>>Dear Andreas and Vito, 
>>> 
>>>Sorry Andreas I screwed it when I typed your name.
>>> 
>>>Vito, I would like to learn from you the reason why you want to use the minimum phase filter for Granger causality analysis. By the way, you know SIFT is available for it? In case you don't know it yet, check out http://sccn.ucsd.edu/wiki/SIFT.
>>> 
>>>Makoto
>>>
>>>
>>>
>>>2014/1/14 Vito de Feo <vito.defeo at zmnh.uni-hamburg.de>
>>>
>>>Dear Andreas,
>>>>
>>>>I download the last version (13.1.1) and now the option is present and it is clearly written that the default is the zero-phase linear filtering.
>>>>
>>>>In my previous version (the last of the EEGLAB 12) this option was not present but now, with the version 13, it is present again!
>>>>
>>>>Best,
>>>>
>>>>Vito 
>>>>
>>>>
>>>>Quoting Andreas Widmann <widmann at uni-leipzig.de>:
>>>>
>>>>
>>>>Dear Vito,
>>>>>
>>>>>
>>>>>in the last eeglab version there is not the minphase parameter in the pop_eegfiltnew function.
Which version is your last version? In 13.1.1 from the web page and in rev 10261 from SVN the option is present. It was initially introduced in EEGLAB 13 (but not backported to EEGLAB 12). Could you please check whether possibly something went wrong with your setup/path and report back your version number?
>>>>>
>>>>>
>>>>>It was useful to force the filter to be causal. If I have understand well now the filter is causal by dafault because it uses the filter funcion. Is this correct?
NO! Causal non-linear filter is NOT the default. Default is and will remain zero-phase linear filtering. Default filter functions did not change since EEGLAB 12.
>>>>>
>>>>>Best,
>>>>>Andreas
>>>>>
>>>>>
>>>>>Sorry if this is a vey well known issue but I didn't find any answer on the web until now.
>>>>>>I need filter causality for Granger analisys. If anyone has also other suggestion about causal filtering with eeglab, any suggestion is very welcome!
>>>>>>
>>>>>>Thank in advange!
>>>>>>
>>>>>>Vito
>>>>>>
>>>>>>
>>>>>>
>>>>>>--
>>>>>>Pflichtangaben gemäß Gesetz über elektronische Handelsregister und Genossenschaftsregister sowie das Unternehmensregister (EHUG):
>>>>>>
>>>>>>Universitätsklinikum Hamburg-Eppendorf
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>>>>>>Gerichtsstand: Hamburg
>>>>>>
>>>>>>Vorstandsmitglieder:
>>>>>>Prof. Dr. Christian Gerloff (Vertreter des Vorsitzenden)
>>>>>>Prof. Dr. Dr. Uwe Koch-Gromus
>>>>>>Joachim Prölß
>>>>>>Rainer Schoppik
>>>>>>
>>>>>>_______________________________________________
>>>>>>Eeglablist page: http://sccn.ucsd.edu/eeglab/eeglabmail.html
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>>>>>>
>>>>>>
>>>>>>
>>>>>>--
>>>>>>Makoto Miyakoshi
>>>>>>Swartz Center for Computational Neuroscience
>>>>>>Institute for Neural Computation, University of California San Diego
>>>>>>_______________________________________________
>>>>>>Eeglablist page: http://sccn.ucsd.edu/eeglab/eeglabmail.html
>>>>>>To unsubscribe, send an empty email to eeglablist-unsubscribe at sccn.ucsd.edu
>>>>>>For digest mode, send an email with the subject "set digest mime" to eeglablist-request at sccn.ucsd.edu
>>>>
>>>>
>>>>
>>>>
>>>>
>>>>--
>>>>Pflichtangaben gemäß Gesetz über elektronische Handelsregister und Genossenschaftsregister sowie das Unternehmensregister (EHUG):
>>>>
>>>>Universitätsklinikum Hamburg-Eppendorf
>>>>Körperschaft des öffentlichen Rechts
>>>>Gerichtsstand: Hamburg
>>>>
>>>>Vorstandsmitglieder:
>>>>Prof. Dr. Christian Gerloff (Vertreter des Vorsitzenden)
>>>>Prof. Dr. Dr. Uwe Koch-Gromus
>>>>Joachim Prölß
>>>>Rainer Schoppik
>>>
>>>
>>> -- 
>>>
>>>Makoto Miyakoshi
>>>Swartz Center for Computational Neuroscience
>>>Institute for Neural Computation, University of California San Diego
>>
>>
>>
>>-- 
>>Pflichtangaben gemäß Gesetz über elektronische Handelsregister und
 Genossenschaftsregister sowie das Unternehmensregister (EHUG):
>>
>>Universitätsklinikum Hamburg-Eppendorf
>>Körperschaft des öffentlichen Rechts
>>Gerichtsstand: Hamburg
>>
>>Vorstandsmitglieder:
>>Prof. Dr. Christian Gerloff (Vertreter des Vorsitzenden)
>>Prof. Dr. Dr. Uwe Koch-Gromus
>>Joachim Prölß
>>Rainer Schoppik
>>
>
>
>
>-- 
>
>Makoto Miyakoshi
>Swartz Center for Computational Neuroscience
>Institute for Neural Computation, University of California San Diego
>
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