[Eeglablist] AMICA Error

[Makoto Miyakoshi]

Dear Jason,

Could you help us here?

Makoto

On Thu, Jun 4, 2015 at 3:43 PM, Tyler Grummett <
tyler.grummett at flinders.edu.au> wrote:

>  Hey Srinivas,
>
>  AMICA has always struggled for me on matlab 2014a. I've run the code
> perfectly on 2012a and then used the same script in 2014a/b and it's given
> me the same kind of error.
>
>  I'm hoping someone with more experience will answer you, but it at least
> doesn't appear as though you're doing something wrong.
>
>  Hope that helps :)
>
>  Tyler
>
>
>
> On 5 Jun 2015, at 7:00 am, Srinivas Kota <svkota at gmail.com> wrote:
>
>   Any help would be appreciated with AMICA error.
>
>  I am using MATLAB R2014a on Mac OS 10.9.5. Here is the two lines of code
> I was trying to run.
>
>  outdir = '/Users/administrator/Desktop/amica_practice/output';
> runamica12( 'Memorize.fdt', 'num_chans', 71,'outdir', outdir );
>
>  To track error, I made minor changes in runamica12.m
>
>  % from line 850
>  if RUN_LOCALLY == 1
>     disp('line 852')
>     AMBIN
>     outdir
>     system([AMBIN ' ' outdir 'input.param'])
>     mods = loadmodout12(outdir)
>     weights = mods.W(:,:,1);
>     sphere = mods.S(1:mods.num_pcs,:);
>     if isnumeric(dat)
>         delete(filename);
>         %system(['rm ' pwd filesep 'tmpdata.fdt']);
>         %system(['del ' pwd filesep 'tmpdata.fdt']);
>     end
>
>  *Here is the error :*
>
>  /bin/bash: qconf: command not found
> /bin/bash: qconf: command not found
> /bin/bash: qconf: command not found
> No recognized parallel environment found. Run qconf -spl to get a list of
> available environments and use keyword use_pe.
> Running locally with maximum of 4 threads.
> mkdir: /Users/administrator/Desktop/amica_practice/output/: File exists
> line 852
>
>  AMBIN = /Users/administrator/Desktop/amica_matlab_scripts/amica12mac64
> outdid = /Users/administrator/Desktop/amica_practice/output/
>
>  /bin/bash:
> /Users/administrator/Desktop/amica_matlab_scripts/amica12mac64: Permission
> denied
>
>  ans = 126
>
>  No gm present, setting num_models to 1
> No W present, exiting
>
>  mods =
>
>      num_models: 1
>       mod_prob: 1
>
>  Reference to non-existent field 'W'.
>
>  Error in runamica12 (line 856)
>     weights = mods.W(:,:,1);
>
>  Error in prac_amica (line 7)
> runamica12( 'Memorize.fdt', 'num_chans', 71,'outdir', outdir );
>
> ***********************************************************
> Srinivas Kota, Ph.D
> Research Scientist
> Movement and Neurosciences Center
> Institute for Rehabilitation Science and Engineering
> Madonna Rehabilitation Hospital
> 5401 South St, Lincoln, NE 68506
> Email: svkota at gmail.com
> Ph:  (618) 319-0471 (cell)
> www.madonna.org/research_institute/index.html
> <https://owa.madonna.org/owa/redir.aspx?C=RNnR5lrQvEmYU7lVtl6kLHIjwe3PiNAI8ouI90lD2Vnn4niuQ5QMBdLYDKmByFhfb525xS5XXT8.&URL=http%3a%2f%2fwww.madonna.org%2fresearch_institute%2findex.html>
> ***********************************************************
>
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-- 
Makoto Miyakoshi
Swartz Center for Computational Neuroscience
Institute for Neural Computation, University of California San Diego
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