[Eeglablist] AMICA Error

Tue Jun 9 06:32:50 PDT 2015

Thanks Jason. This is what I did in Mac terminal. I didn't get any errors
when I tried

[weights,sphere,mods] = runamica12( 'memorize.fdt', 'num_chans',
71,'outdir', outdir );

*$* cd /Users/administrator/Desktop/amica_matlab_scripts

*amica_matlab_scripts administrator$* ls -l

total 25088

-rw-rw-rw-@ 1 administrator  staff  5205872 Jan 26  2012 amica12mac32

-rw-rw-rw-@ 1 administrator  staff  6479160 Jan 26  2012 amica12mac64

*amica_matlab_scripts administrator$* chmod 755 amica12mac64

*amica_matlab_scripts administrator$* ls -l

total 25088

-rw-rw-rw-@ 1 administrator  staff  5205872 Jan 26  2012 amica12mac32

-rwxr-xr-x@ 1 administrator  staff  6479160 Jan 26  2012 amica12mac64

Best

Srinivas

On Mon, Jun 8, 2015 at 10:21 AM, Jason Palmer <japalmer29 at gmail.com> wrote:

> From the error message, it looks like there is a permission problem. Can
> you use chmod or something in a Mac terminal to make amica12mac64
> executable by all? I’m not a regular mac user, and don’t recall getting
> this in testing, but that’s the only thing I can see from the output. The
> binary is not running. As a baseline test, you should be able to run
> “amica12mac64 amicadefs.param” on the mac command line.
>
> Jason
>
>
>
> *From:* Makoto Miyakoshi [mailto:mmiyakoshi at ucsd.edu]
> *Sent:* Sunday, June 07, 2015 6:58 PM
> *To:* Tyler Grummett; Srinivas Kota; Jason Palmer
> *Cc:* EEGLAB List
> *Subject:* Re: [Eeglablist] AMICA Error
>
>
>
> Dear Jason,
>
>
>
> Could you help us here?
>
>
>
> Makoto
>
>
>
> On Thu, Jun 4, 2015 at 3:43 PM, Tyler Grummett <
> tyler.grummett at flinders.edu.au> wrote:
>
> Hey Srinivas,
>
>
>
> AMICA has always struggled for me on matlab 2014a. I've run the code
> perfectly on 2012a and then used the same script in 2014a/b and it's given
> me the same kind of error.
>
>
>
> I'm hoping someone with more experience will answer you, but it at least
> doesn't appear as though you're doing something wrong.
>
>
>
> Hope that helps :)
>
>
>
> Tyler
>
>
> On 5 Jun 2015, at 7:00 am, Srinivas Kota <svkota at gmail.com> wrote:
>
> Any help would be appreciated with AMICA error.
>
>
>
> I am using MATLAB R2014a on Mac OS 10.9.5. Here is the two lines of code I
> was trying to run.
>
>
>
> outdir = '/Users/administrator/Desktop/amica_practice/output';
>
> runamica12( 'Memorize.fdt', 'num_chans', 71,'outdir', outdir );
>
>
>
> To track error, I made minor changes in runamica12.m
>
>
>
> % from line 850
>
> if RUN_LOCALLY == 1
>
>     disp('line 852')
>
>     AMBIN
>
>     outdir
>
>     system([AMBIN ' ' outdir 'input.param'])
>
>     mods = loadmodout12(outdir)
>
>     weights = mods.W(:,:,1);
>
>     sphere = mods.S(1:mods.num_pcs,:);
>
>     if isnumeric(dat)
>
>         delete(filename);
>
>         %system(['rm ' pwd filesep 'tmpdata.fdt']);
>
>         %system(['del ' pwd filesep 'tmpdata.fdt']);
>
>     end
>
>
>
> *Here is the error :*
>
>
>
> /bin/bash: qconf: command not found
>
> /bin/bash: qconf: command not found
>
> /bin/bash: qconf: command not found
>
> No recognized parallel environment found. Run qconf -spl to get a list of
> available environments and use keyword use_pe.
>
> Running locally with maximum of 4 threads.
>
> mkdir: /Users/administrator/Desktop/amica_practice/output/: File exists
>
> line 852
>
>
>
> AMBIN = /Users/administrator/Desktop/amica_matlab_scripts/amica12mac64
>
> outdid = /Users/administrator/Desktop/amica_practice/output/
>
>
>
> /bin/bash: /Users/administrator/Desktop/amica_matlab_scripts/amica12mac64:
> Permission denied
>
>
>
> ans = 126
>
>
>
> No gm present, setting num_models to 1
>
> No W present, exiting
>
>
>
> mods =
>
>
>
>     num_models: 1
>
>       mod_prob: 1
>
>
>
> Reference to non-existent field 'W'.
>
>
>
> Error in runamica12 (line 856)
>
>     weights = mods.W(:,:,1);
>
>
>
> Error in prac_amica (line 7)
>
> runamica12( 'Memorize.fdt', 'num_chans', 71,'outdir', outdir );
>
>
> ***********************************************************
>
> Srinivas Kota, Ph.D
> Research Scientist
> Movement and Neurosciences Center
> Institute for Rehabilitation Science and Engineering
> Madonna Rehabilitation Hospital
> 5401 South St, Lincoln, NE 68506
> Email: svkota at gmail.com
> Ph:  (618) 319-0471 (cell)
> www.madonna.org/research_institute/index.html
> <https://owa.madonna.org/owa/redir.aspx?C=RNnR5lrQvEmYU7lVtl6kLHIjwe3PiNAI8ouI90lD2Vnn4niuQ5QMBdLYDKmByFhfb525xS5XXT8.&URL=http%3a%2f%2fwww.madonna.org%2fresearch_institute%2findex.html>
> ***********************************************************
>
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>
>
>
>
> --
>
> Makoto Miyakoshi
> Swartz Center for Computational Neuroscience
> Institute for Neural Computation, University of California San Diego
>

-- 

***********************************************************
Srinivas Kota, Ph.D
Research Scientist
Movement and Neurosciences Center
Institute for Rehabilitation Science and Engineering
Madonna Rehabilitation Hospital
5401 South St, Lincoln, NE 68506
Email: svkota at gmail.com
Ph:  (618) 319-0471 (cell)
www.madonna.org/research_institute/index.html
<https://owa.madonna.org/owa/redir.aspx?C=RNnR5lrQvEmYU7lVtl6kLHIjwe3PiNAI8ouI90lD2Vnn4niuQ5QMBdLYDKmByFhfb525xS5XXT8.&URL=http%3a%2f%2fwww.madonna.org%2fresearch_institute%2findex.html>
***********************************************************
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