[Eeglablist] AMICA Error

Tyler Grummett tyler.grummett at flinders.edu.au
Thu Jun 4 15:43:45 PDT 2015

Hey Srinivas,

AMICA has always struggled for me on matlab 2014a. I've run the code perfectly on 2012a and then used the same script in 2014a/b and it's given me the same kind of error.

I'm hoping someone with more experience will answer you, but it at least doesn't appear as though you're doing something wrong.

Hope that helps :)


On 5 Jun 2015, at 7:00 am, Srinivas Kota <svkota at gmail.com<mailto:svkota at gmail.com>> wrote:

Any help would be appreciated with AMICA error.

I am using MATLAB R2014a on Mac OS 10.9.5. Here is the two lines of code I was trying to run.

outdir = '/Users/administrator/Desktop/amica_practice/output';
runamica12( 'Memorize.fdt', 'num_chans', 71,'outdir', outdir );

To track error, I made minor changes in runamica12.m

% from line 850
    disp('line 852')
    system([AMBIN ' ' outdir 'input.param'])
    mods = loadmodout12(outdir)
    weights = mods.W(:,:,1);
    sphere = mods.S(1:mods.num_pcs,:);
    if isnumeric(dat)
        %system(['rm ' pwd filesep 'tmpdata.fdt']);
        %system(['del ' pwd filesep 'tmpdata.fdt']);

Here is the error :

/bin/bash: qconf: command not found
/bin/bash: qconf: command not found
/bin/bash: qconf: command not found
No recognized parallel environment found. Run qconf -spl to get a list of available environments and use keyword use_pe.
Running locally with maximum of 4 threads.
mkdir: /Users/administrator/Desktop/amica_practice/output/: File exists
line 852

AMBIN = /Users/administrator/Desktop/amica_matlab_scripts/amica12mac64
outdid = /Users/administrator/Desktop/amica_practice/output/

/bin/bash: /Users/administrator/Desktop/amica_matlab_scripts/amica12mac64: Permission denied

ans = 126

No gm present, setting num_models to 1
No W present, exiting

mods =

    num_models: 1
      mod_prob: 1

Reference to non-existent field 'W'.

Error in runamica12 (line 856)
    weights = mods.W(:,:,1);

Error in prac_amica (line 7)
runamica12( 'Memorize.fdt', 'num_chans', 71,'outdir', outdir );

Srinivas Kota, Ph.D
Research Scientist
Movement and Neurosciences Center
Institute for Rehabilitation Science and Engineering
Madonna Rehabilitation Hospital
5401 South St, Lincoln, NE 68506
Email: svkota at gmail.com<mailto:svkota at gmail.com>
Ph:  (618) 319-0471 (cell)
www.madonna.org/research_institute/index.html<https://owa.madonna.org/owa/redir.aspx?C=RNnR5lrQvEmYU7lVtl6kLHIjwe3PiNAI8ouI90lD2Vnn4niuQ5QMBdLYDKmByFhfb525xS5XXT8.&URL=http%3a%2f%2fwww.madonna.org%2fresearch_institute%2findex.html> ?
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