[Eeglablist] runica not recognized as a parameter in pop_runica

[Vishal Vijayakumar]

Makoto,

What I'm doing is loading the files from a directory and using the
pop_loadset function to store each EEG structure into a cell called EEG for
future use. Then, I pass each cell into the pop_runica function to run the
ICA.

I also discovered the bug. I created a folder called 'runica' to store the
.set files of the ICA analysis. This seemed to create a conflict with the
'runica' parameter. After I changed the folder name to 'runica_all' the
code worked fine. Is there an explanation for this?

Thanks,
Vishal

On Thu, Aug 18, 2016 at 4:45 PM, Makoto Miyakoshi <mmiyakoshi at ucsd.edu>
wrote:

> Dear Vishal,
>
> Hmm I am concerned with EEG{i}. EEG is not a cell but structure... am I
> correct? Try EEG = pop_runica(EEG, ...) instead after retrieving EEG from
> ALLEEG.
>
> Makoto
>
>
>
> On Wed, Aug 17, 2016 at 3:21 PM, Vishal Vijayakumar <vijay059 at umn.edu>
> wrote:
>
>> Hello Makoto,
>>
>> I did some tests, and I realized that while it works fine as a function,
>> when I try to put it in a loop, it fails to recognize runica as a valid
>> parameter. Here's an example:
>>
>> for i = 1:length(EEG)
>>
>> new_egg_ica = pop_runica(EEG{i},'icatype','runica');
>>
>> end
>>
>> This is a scenario where it fails. In cases where I don't iterate through
>> anything, it runs fine.
>>
>> Let me know if there's any more information I can provide.
>>
>> Thanks,
>> Vishal
>>
>> On Wed, Aug 10, 2016 at 6:15 PM, Makoto Miyakoshi <mmiyakoshi at ucsd.edu>
>> wrote:
>>
>>> Dear Vishal,
>>>
>>> This should probably go to EEGLAB Bugzilla.
>>> https://sccn.ucsd.edu/bugzilla/enter_bug.cgi
>>> You may want to file the problem there. I appreciate your patience and
>>> cooperation.
>>>
>>> Meanwhile, as a workaround and testing, I suggest you don't use
>>> 'icatype' option because the default is 'runica' anyway. What version of
>>> Matlab are you using by the way? I've never heard of the problem before.
>>>
>>> Makoto
>>>
>>> On Thu, Aug 4, 2016 at 1:41 PM, Vishal Vijayakumar <vijay059 at umn.edu>
>>> wrote:
>>>
>>>> Hello,
>>>>
>>>> Until recently, I've been able to use runica in scripts by using
>>>> pop_runica(EEG,'icatype','runica').
>>>>
>>>> However, after performing pre-processing on a dataset, the pop_runica
>>>> algorithm fails to recognize it as a parameter, displaying the following
>>>> error:
>>>>
>>>> pop_runica error: wrong value for argument 'icatype'
>>>>
>>>> I don't understand the error. The runica option does not show up in the
>>>> gui either. The same command works well for fastICA. I tried to download
>>>> the toolbox and run it again, but I still face the same issue.
>>>>
>>>> I would appreciate any help you can provide in this issue!
>>>>
>>>> Thanks,
>>>> Vishal
>>>>
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>>>
>>>
>>>
>>> --
>>> Makoto Miyakoshi
>>> Swartz Center for Computational Neuroscience
>>> Institute for Neural Computation, University of California San Diego
>>>
>>
>>
>
>
> --
> Makoto Miyakoshi
> Swartz Center for Computational Neuroscience
> Institute for Neural Computation, University of California San Diego
>
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