[Eeglablist] AMICA on Mac OS

[Jason Palmer]

Hi Fang-Yu,

 

I see a couple of problems. The first is that the file is not being found, and it looks like this is because there is a space in the pathname (specifically “…/pilot study/…”). Could you try it using a pathname and filename without any spaces?

 

Also , to run the “chmod 755 amica15mac” command, you should use the mac Terminal. This can be found in the mac Utilities folder. In the Terminal, run “cd /Users/fmu_neurology/Documents/MATLAB/eeglab_13_6_5b/plugins/AMICA1.5/”, then “chmod 755 amica15mac”.

 

Then try again and it may work, or at least produce different errors J.

 

Best,

Jason

 

From: eeglablist-bounces at sccn.ucsd.edu [mailto:eeglablist-bounces at sccn.ucsd.edu] On Behalf Of Fang-Yu Chang
Sent: Tuesday, January 17, 2017 5:22 PM
To: eeglablist at sccn.ucsd.edu
Subject: Re: [Eeglablist] AMICA on Mac OS

 

Dear eegliblister,

 

I have a related question about AMICA.

I have followed the steps which were mentioned, but AMICA still cannot run. Please check the attached picture.

My OS is El Capitan. Thanks for help in advance.

 

http://imgur.com/1jse9U2

 

Sincerely,

 

Fang-Yu Chang

 

2016-12-16 20:34 GMT+09:00 Jason Palmer <japalmer29 at gmail.com>:

One other issue I recall coming up before. It may very well be necessary to
change the permissions on the binary file to make it executable. So in a
terminal window, cd to the amica1.5 directory (after creating it and
downloading amica15mac to it), and run

$ chmod 755 amica15mac

Then you should be able to run the binary.

Best,
Jason


-----Original Message-----
From: Jason Palmer [mailto:japalmer at ucsd.edu]
Sent: Friday, December 16, 2016 8:28 PM
To: 'Shingo Tokimoto'; 'EEGLAB List'
Subject: RE: [Eeglablist] AMICA on Mac OS

Hi Shingo,

The wiki instructions may be out of date. Could you try this:

1) Create a directory in the eeglab plugins folder, called
..../eeglab/plugins/amica1.5/
2) Download the five .m files into the new amica1.5 directory:
- eegplugin_amica.m
- pop_runamica.m
- runamica15.m
- loadmodout15.m
- eeg_loadamica.m
3) Download the binary amica15mac file to the amica1.5 directory
4) Start eeglab and load a dataset
5) Under the Tools menu, choose Run Amica and click OK to try with the
default parameters. The amica_web webpage has a help link at the bottom with
info on the gui.

The binary is compiled for El Capitan so it may not work with other OS
versions like Sierra. I plan to compile for Sierra when I get access to it.
If you are using El Capitan and have other questions, let me know.

Best,
Jason

-----Original Message-----
From: eeglablist-bounces at sccn.ucsd.edu
[mailto:eeglablist-bounces at sccn.ucsd.edu] On Behalf Of Shingo Tokimoto
Sent: Thursday, December 15, 2016 11:21 PM
To: EEGLAB List
Subject: [Eeglablist] AMICA on Mac OS

Dear EEGLAB users,

I am trying to use AMICA on Mac OS (10.7.5). I have downloaded the m files
and 'amica15mac' from Dr. Jason Palmer's web site, as below.

https://sccn.ucsd.edu/~jason/amica_web.html

Then I followed the instruction of "Amica Download" in EEGLAB wiki below.
However, amica doesn't work on my Mac.

https://sccn.ucsd.edu/wiki/Amica_Download

Could anybody tell me the way? Thank you in advance.

************************************************
Shingo Tokimoto, Ph.D.
in Linguistics and Psychology
Department of Foreign Languages
Mejiro University
4-31-1, Naka-Ochiai, Shinjuku, Tokyo,
161-8539, Japan
tokimoto at mejiro.ac.jp
************************************************


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