[Eeglablist] AMICA setup

Jason Palmer japalmer29 at gmail.com
Thu Feb 9 04:13:32 PST 2017


Hi Jumana,

 

It does look like there is a compatibility issue with the binary and your
work machine. I think it works under Windows 8 and Windows 10, but one
possibility is that your work machine is 32 bit, and not 64 bit? The binary
requires 64 bit architecture. If it is 64 bit, then there may be something
about Windows 8, or some other incompatibility in the processor. Do you know
which processor it is? AMD or Intel?

 

Best,

Jason

 

From: Ahmad, Jumana [mailto:jumana.ahmad at kcl.ac.uk] 
Sent: Thursday, February 09, 2017 8:24 PM
To: Murray, Nicholas P; eeglablist at sccn.ucsd.edu; japalmer at ucsd.edu
Subject: RE: [Eeglablist] AMICA setup

 

The IT department think it is because I am using windows 8. Could this be
correct?

Thanks,

Jumana 

 

From: Ahmad, Jumana 
Sent: 08 February 2017 20:31
To: Murray, Nicholas P <MURRAYNI at ecu.edu>; eeglablist at sccn.ucsd.edu;
japalmer at ucsd.edu
Subject: Re: [Eeglablist] AMICA setup

 


Hi and thanks for your reply,
I actually downloaded the binary files recently from the website into the
systems 32 folder. I use a windows computer. I'm concerned that as it's a
work computer that it could be an access issue as the administrator had to
help me save the files there- I do not have higher level administrator
rights over the systems 32 folder. Is there anywhere else I can save the
binary files?
Apart from adding the binary files and setting the matlab path to the new
amica folder, is there anything else that I should be doing?
Best wishes,
Jumana 
------------------------------------------
Jumana Ahmad
Post-Doctoral Research Worker in Cognitive Neuroscience
EU-AIMS Longitudinal European Autism Project (LEAP) & SynaG Study
Room M1.26.Department of Forensic and Neurodevelopmental Sciences (PO 23) |
Institute of Psychiatry, Psychology & Neuroscience | King's College London |
16 De Crespigny Park | London SE5 8AF

Phone: 0207 848 5359| Email: jumana.ahmad at kcl.ac.uk | Website:
www.eu-aims.eu | Facebook: www.facebook.com/euaims

  _____  

From: Murray, Nicholas P <MURRAYNI at ecu.edu>
Sent: 08 February 2017 21:05:33
To: Ahmad, Jumana
Subject: RE: [Eeglablist] AMICA setup 

 

Jumana

We had the same problem.  We updated the binary files found on
https://sccn.ucsd.edu/~jason/amica_web.html
<https://emea01.safelinks.protection.outlook.com/?url=https:%2F%2Fsccn.ucsd.
edu%2F~jason%2Famica_web.html&data=01%7C01%7Cjumana.ahmad%40kcl.ac.uk%7Cab86
81cfd95449b185c708d450557d4e%7C8370cf1416f34c16b83c724071654356%7C0&sdata=d5
QcgfjVWZsuZUAKgYXHAlyANTr2Af10yhtDp47LQAQ%3D&reserved=0>  

While this seems to be a simple fix: the file path must not include spaces.
It corrected this problem and ran.

Nick

 

From: eeglablist-bounces at sccn.ucsd.edu
[mailto:eeglablist-bounces at sccn.ucsd.edu] On Behalf Of Ahmad, Jumana
Sent: Wednesday, February 08, 2017 12:59 PM
To: japalmer at ucsd.edu; eeglablist at sccn.ucsd.edu
Subject: Re: [Eeglablist] AMICA setup

 

Dear Jason,

Thank you. I now instead get this error:

 

Reference to non-existent field 'W'.

 

Error in runamica15 (line 869)

    weights = mods.W(:,:,1);

 

Error in ICA2_AMICA (line 112)

    runamica15(data.data, 'num_chans', data.nbchan,...

 

Best wishes,

Jumana 

 

From: Jason Palmer [mailto:japalmer29 at gmail.com] 
Sent: 04 February 2017 06:49
To: Ahmad, Jumana <jumana.ahmad at kcl.ac.uk>; eeglablist at sccn.ucsd.edu
Subject: RE: [Eeglablist] AMICA setup

 

Dear Jumana,

 

The variable AMBIN is set by checking whether the binary file is in the
directory where the runamica15.m file is. Are you sure you have the
amica15mkl.exe file in the amica1.5 plugin directory or whichever directory
you have the runamica15.m file in?

 

Best,

Jason

 

From: eeglablist-bounces at sccn.ucsd.edu
[mailto:eeglablist-bounces at sccn.ucsd.edu] On Behalf Of Ahmad, Jumana
Sent: Saturday, February 04, 2017 7:26 AM
To: eeglablist at sccn.ucsd.edu
Subject: [Eeglablist] AMICA setup

 

Dear all,

I have the following error when setting up AMICA:

 

Undefined function or variable 'AMBIN'.

 

Error in runamica15 (line 867)

    system([AMBIN ' ' outdir 'input.param']);

 

Error in ICA2_AMICA (line 112)

    runamica15(data.data, 'num_chans', data.nbchan,...

 

I set it up fine on my personal PC, but my work PC is giving this error.

Could it be due to the windows32 folder access where I saved the binary
files?

Best wishes,

Jumana 

 

------------------------------------------

Jumana Ahmad

Post-Doctoral Research Worker in Cognitive Neuroscience 

EU-AIMS Longitudinal European Autism Project (LEAP) & SynaG Study

Room M1.09. Department of Forensic and Neurodevelopmental Sciences (PO 23) |
Institute of Psychiatry, Psychology & Neuroscience | King's College London |
16 De Crespigny Park | London SE5 8AF

 

Phone: 0207848 0260| Email: jumana.ahmad <mailto:antonia.sanjose at kcl.ac.uk>
@kcl.ac.uk | Website:
<https://emea01.safelinks.protection.outlook.com/?url=http%3A%2F%2Fwww.eu-ai
ms.eu%2F&data=01%7C01%7Cjumana.ahmad%40kcl.ac.uk%7Cec14cc70d54b4bbe934008d44
cc9dffb%7C8370cf1416f34c16b83c724071654356%7C0&sdata=ukxSGrb5GwQXQpTdhBydP9M
KMe3uPzpDqk1IXNVU2eg%3D&reserved=0> www.eu-aims.eu | Facebook:
<https://emea01.safelinks.protection.outlook.com/?url=http%3A%2F%2Fwww.faceb
ook.com%2Feuaims&data=01%7C01%7Cjumana.ahmad%40kcl.ac.uk%7Cec14cc70d54b4bbe9
34008d44cc9dffb%7C8370cf1416f34c16b83c724071654356%7C0&sdata=fUmFeDZBPHOL8py
W%2BMO7tWwGLu59yl1Ao85K4nNjP0w%3D&reserved=0> www.facebook.com/euaims

 

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