[Eeglablist] Questions about topographic plot for all subjects and conditions (Makoto's Preprocessing Pipeline)

Sun Jun 7 09:30:45 PDT 2020

Yes I checked this code before. My question is for how can I get the level of significance and those areas in the brain (like the figures I attached before), is there any code without using STUDY design ? (I am sorry, not very good in coding).  With STUDY, I have some questions, which I mentioned in the original email.

Thanks a lot.
Mahjabeen
________________________________
From: eeglablist <eeglablist-bounces at sccn.ucsd.edu> on behalf of Makoto Miyakoshi <mmiyakoshi at ucsd.edu>
Sent: Saturday, June 6, 2020 2:38 PM
To: eeglablist at sccn.ucsd.edu <eeglablist at sccn.ucsd.edu>
Subject: Re: [Eeglablist] Questions about topographic plot for all subjects and conditions (Makoto's Preprocessing Pipeline)

Dear Mahjabeen,

Yup I saw it. Have you check this code already?
https://urldefense.com/v3/__https://nam02.safelinks.protection.outlook.com/?url=https*3A*2F*2Fsccn.ucsd.edu*2Fwiki*2FMakoto*2527s_useful_EEGLAB_code*23Batch-process_all-channel_PSDs_in_both_dB_and_uV.5E2.2FHz_.2803.2F17.2F2020_updated.29&data=02*7C01*7Cmahjabeen.rahman*40knights.ucf.edu*7C3b81c52a017c4ad8c1fa08d80a4c4c27*7C5b16e18278b3412c919668342689eeb7*7C0*7C0*7C637270670096460889&sdata=S8jBzb36IrNLuMSkLqW0Rk1D1s4hvr3yVDJWgSLP4fo*3D&reserved=0__;JSUlJSUlJSUlJSUlJSUlJQ!!Mih3wA!X6GGzi4XYylE9yJNNaEVQk3CRA5EVlBUCCe8rxgOPFP08PpugTcH-BkQPkTwdKNUDunUmA$ 

Makoto

On Sat, Jun 6, 2020 at 11:23 AM Mahjabeen Rahman <
mahjabeen.rahman at knights.ucf.edu> wrote:

> Hi Makoto,
>
> Thanks for your reply. I attached here again as a zipped folder. Can you
> see them now ?
>
> Best,
> Mahjabeen
> ------------------------------
> *From:* eeglablist <eeglablist-bounces at sccn.ucsd.edu> on behalf of Makoto
> Miyakoshi <mmiyakoshi at ucsd.edu>
> *Sent:* Saturday, June 6, 2020 1:17 PM
> *To:* EEGLAB List <eeglablist at sccn.ucsd.edu>
> *Subject:* Re: [Eeglablist] Questions about topographic plot for all
> subjects and conditions (Makoto's Preprocessing Pipeline)
>
> Dear Mahjabeen,
>
> Unfortunately the attached figure you mention did not show up on the
> screen. Most likely you have to write code to do it.
> Send me the figure you tried to attach and I can give you more info.
>
> Makoto
>
> On Thu, Jun 4, 2020 at 3:01 AM Mahjabeen Rahman <
> mahjabeen.rahman at knights.ucf.edu> wrote:
>
> > Hi fellow researchers,
> >
> > I am looking for creating topographic map for all subjects and all
> > conditions with level of significance like the attached figures. My
> > questions are,
> >
> >
> >   1.  Does anyone have the codes to generate this topographic plots (like
> > the attached) ? (If I don't want to use STUDY)
> >   2.  If I use STUDY design, in that case, can I use the cleaned data
> with
> > manually rejected components ?  Also I found in Makoto's preprocessing,
> >
> > "When creating STUDY, I usually load all the .set files into EEGLAB using
> > pop_loadset() with 'loadmode', 'info' (it may be possible to do it from
> GUI
> > too, but it is convenient to input EEG.subject and EEG.group altogether
> at
> > this point). Importantly, creating a STUDY cleans your data because it
> > performs IC rejection based on the two criteria: 1) dipoles with > 15%
> > residual variance--Artoni et al. (2014) showed (indirect) evidence of why
> > this value is about optimum; 2) dipoles outside brain--no argument. This
> is
> > why you don't need to bother to manually reject ICs at the individual
> > level."
> >
> > I already did the cleaning, hence asking.
> >
> > Thanks in advance,
> >
> > Mahjabeen Rahman
> > PhD Student
> > Industrial Engineering & Management Systems
> > University of Central Florida
> > _______________________________________________
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