[Eeglablist] BIDS export for sourcedata possible?

[Nadine Jacobsen]

Dear Cyril,

Yes, exactly I used the bids_matlab_tools to create a BIDS compliant dataset.  I thought I cannot add XDF files as rawdata, so I saved all my files as SET files and created the BIDS dataset with them. The specifications (https://urldefense.com/v3/__https://bids-specification.readthedocs.io/en/latest/04-modality-specific-files/03-electroencephalography.html*eeg-recording-data__;Iw!!Mih3wA!SPMd0_PBmZcJ53aGhMQNDdA7YNoQ5j_uILSwIEA02nWiqHWV4Pmpn8rD5JW1YA4xMA6hHg$  ) suggest to save the original files in a sourcedata directory and I wondered whether I could create this with the bids_matlab_tools, as well. If there is an easy way to add the option of including  XDF raw files, I would greatly appreciate it! We want to change the data storage for the whole lab to BIDS and many of us record in XDF, so this would be pretty nice. 

Dear Scott and Ramon, thank you for the helpful information, too!

Kind regards, 
Nadine

-----Ursprüngliche Nachricht-----
Von: PERNET Cyril <cyril.pernet at ed.ac.uk> 
Gesendet: Montag, 7. Dezember 2020 17:04
An: Ramón Martinez <nucleuscub at gmail.com>; Nadine Jacobsen <nadine.jacobsen1 at uni-oldenburg.de>
Cc: eeglablist at sccn.ucsd.edu; arno delorme <arnodelorme at gmail.com>
Betreff: RE: [Eeglablist] BIDS export for sourcedata possible?

Hi Nadine,

Just to make sure I understand, you would like to use bids_matlab_tools (https://urldefense.com/v3/__https://github.com/sccn/bids-matlab-tools__;!!Mih3wA!SPMd0_PBmZcJ53aGhMQNDdA7YNoQ5j_uILSwIEA02nWiqHWV4Pmpn8rD5JW1YA6J7HakPA$ ) to create a BIDS compliant dataset which includes your raw xdf-files?
I don’t think we do that right now, but it's an easy option to add - do let us know.

Thanks
Cyril


-----Original Message-----
From: Ramón Martinez <nucleuscub at gmail.com>
Sent: 04 December 2020 16:41
To: Nadine Jacobsen <nadine.jacobsen1 at uni-oldenburg.de>
Cc: eeglablist at sccn.ucsd.edu
Subject: Re: [Eeglablist] BIDS export for sourcedata possible?

Dear Nadine,
At the SCCN we have been developing a toolbox to manage the importing and exporting of BIDS formatted files from EEGLAB. Take a look at this
repository: https://urldefense.com/v3/__https://github.com/sccn/bids-matlab-tools__;!!Mih3wA!WJkowe_Z5VOS4SYGYDxswVmwckkdzIXVUpag_iFdRiQTn61QY8SKGpuBMHu_EYg3lxreag$ .
Note there are some examples that are worth looking at first.
 Hope this helps,
Ramon

On Wed, Dec 2, 2020 at 4:20 PM Nadine Jacobsen < nadine.jacobsen1 at uni-oldenburg.de> wrote:

> Hey everyone,
>
> I am using the bids_export function to convert my datasets to the BIDS 
> standard.  Thanks to the great examples online this was fairly easy. I 
> have xdf-files, so I can only store set-files in the BIDS subject 
> folders and would like to store the original files in a sourcedata 
> folder. I was wondering whether there is already a way to do this 
> using eeglab? I couldn't find anything but maybe I missed it?
>
> Thanks a lot,
> Nadine
>
>
> M.Sc. Nadine Jacobsen
> Doctoral Student
>
> University of Oldenburg
> School of Medicine and Health Sciences Department of Psychology, 
> Neuropsychology Lab Ammerländer Heerstr. 114-118
> D-26111 Oldenburg
>
> Building A06, 0-047
> Phone: +49 (0) 441 798 2935
> E-Mail: nadine.jacobsen at uol.de<mailto:nadine.jacobsen at uol.de>
>
>
>
>
> _______________________________________________
> Eeglablist page: http://sccn.ucsd.edu/eeglab/eeglabmail.html
> To unsubscribe, send an empty email to 
> eeglablist-unsubscribe at sccn.ucsd.edu
> For digest mode, send an email with the subject "set digest mime" to 
> eeglablist-request at sccn.ucsd.edu
>


--
_____________________________________________________
Ramon Martinez-Cancino
Swartz Center for Computational Neuroscience Institute for Neural Computation, University of California San Diego

The University of Edinburgh is a charitable body, registered in Scotland, with registration number SC005336.