[Eeglablist] Run REST plugin from the command line

[pancy at udel.edu]

Dear Cedric, 

Glad to hear that you have a plan to develop this function in command line. Hope that I will hear from you when you have finished that. 

Best,
Pancy

-----Original Message-----
From: Cedric Cannard <ccannard at protonmail.com> 
Sent: Saturday, July 29, 2023 11:45 AM
To: EEGLAB List <eeglablist at sccn.ucsd.edu>
Subject: Re: [Eeglablist] Run REST plugin from the command line

Dear Pancy,

Glad to hear it is helpful.

Sorry, I started adding that feature and ran out of time so it’s not currently available via command line. It’s not hard but unfortunately I cannot do this until September.

Cedric

On Fri, Jul 28, 2023 at 13:41, Pancy Pang via eeglablist <[eeglablist at sccn.ucsd.edu](mailto:On Fri, Jul 28, 2023 at 13:41, Pancy Pang via eeglablist <<a href=)> wrote:

> Dear Cedric,
>
> Thank you very much for developing these scripts for REST reference, I am looking for way to do it with script and I see your reply just at the moment that I need. I am grateful that you share your work.
>
> I am now trying to adapt it to my pipeline but I have one question: in the GUI, there is an option for choosing "original reference". I am using a fixed electrode rather than average. How can I specify it in the script?
>
> Is it this part in ref_infinity.m:
> % Ref to average
> EEG.data = EEG.data - repmat(mean(EEG.data),size(EEG.data,1),1);
>
> How can I change it to a "fixed electrode"? (in the GUI, I don't need 
> to specify which one is the "fixed electrode". I don't know what I 
> should use to replace "mean(EEG.data)" in the above script. The 
> mastoid?)
>
> Best,
> Pancy
>
> -----Original Message-----
> From: Cedric Cannard <ccannard at protonmail.com>
> Sent: Saturday, July 15, 2023 11:48 PM
> To: eeglablist at sccn.ucsd.edu
> Subject: Re: [Eeglablist] Run REST plugin from the command line
>
> Dear Luisa,
>
> I made a plugin to allow command line referencing with the REST method 
> (same algorithms). See here: <a 
> href="https://urldefense.com/v3/__https://github.com/amisepa/reference
> _infinity__;!!Mih3wA!FYYICgyeRto26lB5RSytzW9nJbkKzl0Ez3uhqOItkrAoAKW63
> R-F7lnJti2MAE4ja2_fMG2utwtmL_hGmH7baTNFdQ$">https://urldefense.com/v3/
> __<a href="https://urldefense.com/v3/__https://github.com/amisepa/reference_infinity__;!!Mih3wA!BqlgiVyKOdb__;!!Mih3wA!HDv9pNm07aVSr9ohyJoxbs2QS2HKvKhArqMLCYD5WsqGYWNPUubutVS1uSKWL61fFVwZ7Q47fBZEdO6H0_BF$">https://github.com/amisepa/reference_infinity__;!!Mih3wA!BqlgiVyKOdb</a>
> zJj8umTqTEriqdCqCyQsxHqIKS4o-LjmT9YbMnMpUKZaKGIe8M1_OB5aRmPl317onmBBT5
> xbL$ </a>
>
> <a href="https://urldefense.com/v3/__https://github.com/amisepa/reference_infinityYou__;!!Mih3wA!FYYICgyeRto26lB5RSytzW9nJbkKzl0Ez3uhqOItkrAoAKW63R-F7lnJti2MAE4ja2_fMG2utwtmL_hGmH7oN_VS4Q$">https://urldefense.com/v3/__https://github.com/amisepa/reference_infinityYou__;!!Mih3wA!BqlgiVyKOdbzJj8umTqTEriqdCqCyQsxHqIKS4o-LjmT9YbMnMpUKZaKGIe8M1_OB5aRmPl317onmIj4CCOP$ </a> can install it via EEGLAB extension manager, there are some examples in the tuto.
>
> Best,
>
> Cedric Cannard, PhD
>
> On Fri, Jul 14, 2023 at 15:54, Luisa Mwole via eeglablist <[eeglablist at sccn.ucsd.edu](mailto:On Fri, Jul 14, 2023 at 15:54, Luisa Mwole via eeglablist <<a href=)> wrote:
>
>> Dear all,
>>
>> Could you please help me with some example code on how to run the 
>> REST plugin from the command line? I couldn't find any hints on GitHub etc.
>> Thanks!
>>
>> Kind regards
>> Luisa Mwole
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