[Eeglablist] running AMICA with multiple models for subject data

[japalmer29 at gmail.com]

Hi Theresa,	

That matlab script is only for use on the NSG portal cluster, and it looks
like you are trying to run it locally. If that is the case, I suggest you
try downloading the regular amica plugin from file->manage extensions. Then
you can use the gui, or the runamica15.m function.

Best,
Jason

-----Original Message-----
From: eeglablist <eeglablist-bounces at sccn.ucsd.edu> On Behalf Of
Hauge,Theresa C via eeglablist
Sent: Tuesday, June 11, 2024 11:06 AM
To: eeglablist at sccn.ucsd.edu
Subject: [Eeglablist] running AMICA with multiple models for subject data

Hello,

I am trying to run amica17_nsg.m on a combined EEG dataset which includes
both mobile and standing conditions. However, I am only able to load my
preprocessed dataset until I receive an error message in the command window.
My current steps up until this point:

  1.  Add path to amica17_nsg folder; remove paths to any other instances of
AMICA in path
  2.  Preprocess data (HPF, cleanline, channel/time window rejection,
iCanClean)
  3.  Open MATLAB session on local desktop
  4.  Load EEG dataset
  5.  Declare variables (out_dir, num_models =3)
  6.  Enter the following into the command line:
     *   runamica17_nsg(EEG, 'outdir', out_dir, 'do_reject', 1, 'numrej', 5,
'rejsig', 4, 'num_models', num_models)

The output in the command window:
Will overwrite output in Z:\theresa.hauge\AMICA\amica17-test\
The syntax of the command is incorrect.
Running AMICA across multiple nodes ...
'export' is not recognized as an internal or external command, operable
program or batch file.

I have also attached the input.param file that is created. Any help or
guidance would be appreciated!


Sincerely,
            Theresa


Theresa C. Hauge, M.A.
She/Her/Hers
PhD Candidate, Applied Physiology & Kinesiology Neuromotor Behavior
Laboratory University of Florida
theresa.hauge at ufl.edu<mailto:theresa.hauge at ufl.edu>
@TheresaCHauge

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