[Eeglablist] std selectICsByCluster

[Francesca Zidda]

Hi Makoto,

I need to extract the percent variance accounted for a certain cluster in the backprojected ERP.

I think I should better use std_envtopo, which seems to be working.

Thanks so much for dedicating me your time!

Francesca


> Il giorno 26.07.2024, alle ore 23:34, Makoto Miyakoshi via eeglablist <eeglablist at sccn.ucsd.edu> ha scritto:
> 
> The easiest way to do it is to use the old STUDY. But I'm afraid the
> problem is that unless you fixed the seed of the random number generators,
> you can never reproduce the IC clustering result exactly.
> What do you want to do? Do you want to cluster-select ICs for
> rejection/retaining? If that's the need, maybe it's much easier to write a
> snippet rather than fixing the plugin.
> 
> Makoto
> 
>> On Thu, Jul 25, 2024 at 8:59 AM Francesca Zidda <francescazidda at gmail.com>
>> wrote:
>> 
>> Hi Makoto,
>> 
>> Thanks for your answer.
>> I did analyse these data a while back and just needed this now to answer a
>> reviewer.
>> Any suggestion on how to do this fast?
>> 
>> I am interested in your offer, thanks! Let us discuss how would this go :)
>> 
>> Best,
>> 
>> Frà
>> 
>>> On 24. Jul 2024, at 17:47, Makoto Miyakoshi via eeglablist <
>> eeglablist at sccn.ucsd.edu> wrote:
>>> 
>>> Hi Frà,
>>> 
>>> Thank you for your interest in std_selectICsByCluster(). I have long
>>> forgotten it, not because of TGA :-) but because it's been awhile since I
>>> had stopped using STUDY. STUDY's internal structure was changed by update
>>> some years ago, and I gave up all the plugins for STUDY.
>>> 
>>> I have been receiving similar inquiries/requests for my other plugins for
>>> EEGLAB STUDY. In one of these cases, the person agreed to update the
>> plugin
>>> together with me and publish it as a technical paper as a first author
>> with
>>> me being the last author. Are you interested in this plan
>>> for std_selectICsByCluster()? There is one journal looking for such a
>>> paper, which makes it a nice opportunity.
>>> 
>>> Makoto
>>> 
>>> On Tue, Jul 23, 2024 at 8:11 AM Francesca Zidda via eeglablist <
>>> eeglablist at sccn.ucsd.edu> wrote:
>>> 
>>>> Dear EEGlab developers and users,
>>>> 
>>>> Is there any way to extract the percent variance accounted for (PVAF)
>> an IC
>>>> group cluster in study.
>>>> I have used std selectICsByCluster in the past but it seems it has not
>> been
>>>> updated in a while.
>>>> 
>>>> Thanks,
>>>> --
>>>> Frà
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