[Eeglablist] Out of Memory issues
Arnaud Delorme
arno at ucsd.edu
Sun Sep 30 13:21:09 PDT 2012
Dear Dwight,
try out EEGLAB 12 (currently requires SVN download but you may wait one or two weeks until we release a zip file) as it has full memory mapping implementation. This should solve most of the memory errors.
Best,
Arno
On 25 Sep 2012, at 05:35, Matthew Zivot wrote:
> I played around with converting the data to a unsigned 16bit integer
> (unit16). This greatly reduced the storage size of each file, which is
> currently read in as a double. As far as I am aware, EEG polarity is
> always positive, and less than 2^16.
>
> Quoting Jim Parkinson <jimparkinson at me.com>:
>
>> Matlab is pretty ropey at memory management. What's more, if you're
>> running 32 bit Matlab, the maximum physical memory it can use, i
>> think, 4gb, irrespective of how much your machine has. So my short
>> answer (and the most effective long term, IMO) is to get more RAM
>> and 64 bit Matlab. The former is dead cheap these days, the latter
>> not so, I'm afraid! :-)
>>
>>
>> ------------------------------------------------
>> Dr Jim Parkinson, PhD
>>
>> Postdoctoral Researcher,
>> Body and Action Group,
>> Institute of Cognitive Neuroscience,
>> UCL,
>> Alexandra House
>> 17 Queen Square
>> London WC1N 3AR
>>
>> Tel: +44 207679 5431
>>
>> jimparkinson at me.com
>> jim.parkinson at ucl.ac.uk
>>
>> On 21 Sep 2012, at 22:32, Dwight Peterson
>> <dwight.peterson23 at gmail.com> wrote:
>>
>>> Hi all,
>>>
>>> I am getting an output message of OUT OF MEMORY quite often
>>> when attempting to use certain functions within EEGLAB. For
>>> example, this OUT OF MEMORY message occurs when I try to re-sample
>>> my dataset after it has been successfully loaded in to EEGLAB. The
>>> reason I am trying to re-sample is because our data acquisition
>>> system is extremely high resolution, however, this leads to memory
>>> issues given that the sampling rate is 48000 Hz. Because we are
>>> limited in terms of our equipment, I was trying to re-sample to a
>>> smaller sampling rate, but I keep getting this error message.
>>> Also, this error message comes up when I try to load in a saved
>>> continuous EEG dataset that I have already processed. However, if
>>> I re-create the eeg dataset from the beginning (e.g., import > from
>>> .mat array) there is no such error message.
>>> I have already tried the memory options within the File menu
>>> of the EEGLAB GUI.
>>>
>>> Any suggestions would be most appreciated!
>>>
>>> Thanks!
>>>
>>> --Dwight--
>>>
>>> --
>>> Dwight J. Peterson, M.A.
>>> Graduate Assistant
>>> Cognitive and Brain Sciences
>>> Department of Psychology/296
>>> Memory and Brain Laboratory
>>> University of Nevada, Reno
>>> Reno, NV 89557
>>> Cellular: 319-231-8596
>>> Laboratory: 775-682-8667
>>>
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>
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