[Eeglablist] Coherence or Correlation among set of electrodes

[Tim Mullen]

well, our (not yet released) Hierarchical Bayesian Modeling approach is
geared specifically towards multi-subject (second-level) analysis with
possible missing data.  Iman's question is what to do if, in a
*single*subject, there is more than one source in a given region of
interest. How
shall he select "the appropriate source?" My answer is another question:
what does one mean by "the appropriate source?" For instance, there are
many possible sources of EEG activity in the frontal cortex. If a subject
produces multiple frontal components, the decision as to which to select
depends on the specificity of the hypothesis being tested. If your
hypothesis is restricted to a specific anatomical region in the frontal
cortex, then you might localize the components -- using your choice of
localization method (e.g. equiv. current dipole, minimum-norm, or
beamforming) -- and select any component which localizes to this region. If
your hypothesis is more general (e.g. you care only whether any frontal
region interacts with any parietal region) then you should enter
*all*candidate frontal and parietal sources into a
*multivariate* model and examine the *partial* coherence (or perhaps
multivariate granger causal, if you care about directed relationships)
relationships between your variables of interest. As Makoto mentioned, this
sort of thing is entirely possible in the SIFT framework. The handbook has
some more details and references.

Tim



On Mon, Oct 15, 2012 at 9:36 PM, Makoto Miyakoshi <mmiyakoshi at ucsd.edu>wrote:

> Dear Iman and ICA persons,
>
> > So, how can I pick up topo and source time series
> > among all 128 sources
>
> Jason and Scott, this Iman's question is legitimate. I have been
> asking the same question too. Other than Tim's new implementation of
> the Bayesian stuff in SIFT in future, what other conventional approach
> can help?
>
> Makoto
>
>
> 2012/10/15 Iman M.Rezazadeh <irezazadeh at ucdavis.edu>:
> > Dear Makoto and Tim,
> > Thanks for your reply and suggestion  ! I will definitely go through
> SIFT to
> > see how can it help me ...
> > Each source (after BSS) has a time series and a topo map. Suppose that I
> > have 128 channels means 128 sources and I want to know which sources are
> > related to each other. So, how can I pick up topo and source time series
> > among all 128 sources ( after removing some sources in the artifact
> > rejection stage ) ?
> > - for an example, I am interested to see if there is any fronto-parital
> > synchrony for an inhibitory task. After BSS, there are more than 1 source
> > which have frontal or parietal major activities in their topo. Now how
> could
> > I select the appropriate source?
> >
> > I have found the attached paper. Do you have any thought?
> > Best,
> > Iman
> >
> > Iman M.Rezazadeh, PhD
> > Postdoctoral Fellow
> > Center for Mind and Brain
> > University of California, Davis
> > irezazadeh at ucdavis.edu
> > cell:310-490-1808
> >
> >
> >
> > -----Original Message-----
> > From: Makoto Miyakoshi [mailto:mmiyakoshi at ucsd.edu]
> > Sent: Monday, October 15, 2012 7:53 PM
> > To: Iman M.Rezazadeh
> > Cc: eeglablist at sccn.ucsd.edu
> > Subject: Re: [Eeglablist] Coherence or Correlation among set of
> electrodes
> >
> > Dear Iman,
> >
> > I wonder why Tim did not mention his SIFT.
> > http://sccn.ucsd.edu/wiki/SIFT
> > Apply SIFT after ICA. You can choose ICs so that they cover areas of
> > interests.
> >
> > Makoto
> >
> > 2012/10/15 Iman M.Rezazadeh <irezazadeh at ucdavis.edu>:
> >> Hi,
> >>
> >> Just wonder if there is a way to calculate the coherence measure
> >> between two regions( set of channels-instead of two single channels)
> >> in EEGLAB or any other software?  In other word, how can we find
> >> regions in the brain which their activities are mostley related to each
> > other using EEG ?
> >>
> >>
> >>
> >> Best,
> >>
> >> Iman
> >>
> >>
> >>
> >> Iman M.Rezazadeh, PhD
> >>
> >> Center for Mind and Brain
> >>
> >> University of California, Davis
> >>
> >> irezazadeh at ucdavis.edu
> >>
> >> cell:310-490-1808
> >>
> >>
> >>
> >>
> >> _______________________________________________
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> >
> >
> >
> > --
> > Makoto Miyakoshi
> > JSPS Postdoctral Fellow for Research Abroad Swartz Center for
> Computational
> > Neuroscience Institute for Neural Computation, University of California
> San
> > Diego
>
>
>
> --
> Makoto Miyakoshi
> JSPS Postdoctral Fellow for Research Abroad
> Swartz Center for Computational Neuroscience
> Institute for Neural Computation, University of California San Diego
>



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