[Eeglablist] fmrib plugin for EEG-fMRI datasets

[Joshua Balsters]

Dear Sara

AMRI also have a toolbox that uses ICA and mutual information to detect and
remove artifactual components. The r peak detection is based on the fmrib
toolbox code and uses the TEO.

http://amri.ninds.nih.gov/cgi-bin/software
http://www.ncbi.nlm.nih.gov/pubmed/22036675?dopt=Abstract

Best
Josh


On 15 November 2013 02:14, Arnaud Delorme <arno at ucsd.edu> wrote:

> Dear Sara,
>
> yes, I think the Bergen plugin is the one I was thinking about.
> Not being expert in the field, I do not know the other plugins. Maybe
> these are the only two.
> Best,
>
> Arno
>
> On Nov 14, 2013, at 2:45 AM, Sara Assecondi <s.assecondi at bham.ac.uk>
> wrote:
>
> Dear Arno,
>
> Thank you for your reply.
> I’ll try to fix the code and possibly send it to you, in case someone else
> is interested, obviously if this is fine with the plugin’s author.
>
> I was wondering if you could also point me to other plugins for MR-related
> artifact removal: I am aware of the Bergen plugin, but as far as I
> understand it does not deal with the ballistocardiographic artifact, which
> is the artifact I need to remove. I do have some home-made code
> implementing Allen’s Average Artifact Subtraction, but I am interested in
> comparing it to other approaches.
>
> Any input on this would be very much appreciated.
>
> Thanks
> Best regards
> Sara
>
>  *From:* Arnaud Delorme [mailto:arno at ucsd.edu]
> *Sent:* 13 November 2013 21:55
> *To:* Sara Assecondi
> *Cc:* eeglablist at sccn.ucsd.edu
> *Subject:* Re: [Eeglablist] fmrib plugin for EEG-fMRI datasets
>
> Dear Sarah,
>
> where did you get the plugin from. If it is the one included in EEGLAB, it
> is the latest version. However, this plugin is not supported any more. Are
> you familiar with Github or Google code? Maybe you could put there and you
> could fix whatever you think needs to be fixed. Otherwise, you could send
> us your changes and we will replace the files.
>
> Note that there are now other plugins to remove fMRI artifacts.
>
> Thanks,
>
> Arno
>
> On Nov 12, 2013, at 7:30 AM, Sara Assecondi <s.assecondi at bham.ac.uk>
> wrote:
>
>
>  I edited the function fmrib_qrsdetect() and I found problems in the way
> the variables are addressed (more specifically wrong names of the fields of
> the EEG structure). These issues are easy to fix, but before starting to
> modify the code I was wondering if the version of the plugin I am using
> might not be up to date.
>
>
>
>
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-- 
Joshua Henk Balsters
Postdoctoral Fellow

Neural Control of Movement Lab
Department of Health Sciences and Technology
ETH Zurich, Switzerland

Y36 M 12
Winterthurerstrasse 190
8057 Zuerich

Tel: +41 44 63 56101
email: joshua.balsters at hest.ethz.ch
http://angelaschoellig.academia.edu/JoshuaBalsters
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