[Eeglablist] Why doesn't BINICA show up as an option in ICA?

Jacob Anderson jea at umn.edu
Mon May 12 11:00:19 PDT 2014


I just successfully ran the 'ica.exe' available from the Wiki on some data
within EEGLAB/MATLAB. Cool, it appears to have worked fine!
Cheers,
Jake



On Mon, May 12, 2014 at 12:27 PM, Jacob Anderson <ande2523 at umn.edu> wrote:

> Dear Makoto,
> From the Wiki BINICA page under the "Download" head, it looks like a
> recent compiled version (with improved PCA reduction) for Windows isn't
> available. It goes on to say that the older compiled versions won't run
> within MATLAB and can't be used with binica.m(). However, one can download
> those older versions to run them externally. The code you provided to
> Natalie and her successful efforts to run BINICA (in Win8) suggest that you
> can actually run BINICA within MATLAB on recent versions of Windows, which
> is cool!  I was wondering if the version Natalie was using is the version
> from the wiki page or if someone compiled a new one with the provided
> source code. Natalie mentioned that she inherited the version she's using
> and doesn't know much about its origins.
> Cheers,
> Jake
>
>
>
> On Mon, May 12, 2014 at 10:52 AM, Makoto Miyakoshi <mmiyakoshi at ucsd.edu>wrote:
>
>> Dear Jake,
>>
>> At least I haven't heard of any problem yet. Is there a binica problem
>> depending on windows versions?
>>
>> Makoto
>>
>>
>> 2014-05-11 19:22 GMT-07:00 Jacob Anderson <ande2523 at umn.edu>:
>>
>> Hi Everyone,
>>> Will the older Windows binary work on Windows 7 machines? I'm assuming
>>> that Natalie isn't running XP. The only Windows version I know of is on
>>> BINICA wiki page. Is there another version that's available?
>>>
>>> Thanks,
>>> Jake
>>> On May 8, 2014 5:18 PM, "Natalie Prowse" <
>>> NatalieProwse at cmail.carleton.ca> wrote:
>>>
>>>>  ​Thank-you Makoto.  I have logged the bug (1604) and am using your
>>>> work around.
>>>>
>>>>
>>>>  regards,
>>>>
>>>> -Natalie
>>>>  ------------------------------
>>>> *From:* Makoto Miyakoshi <mmiyakoshi at ucsd.edu>
>>>> *Sent:* Thursday, May 8, 2014 12:44 PM
>>>> *To:* Natalie Prowse
>>>> *Cc:* eeglablist at sccn.ucsd.edu
>>>> *Subject:* Re: [Eeglablist] Why doesn't BINICA show up as an option in
>>>> ICA?
>>>>
>>>>  Dear Natalie,
>>>>
>>>>  Sorry for inconvenience.
>>>> I'd like to give you a temporal solution using a command line meanwhile
>>>> you post it as a bug to bugzilla
>>>> https://sccn.ucsd.edu/bugzilla/enter_bug.cgi
>>>>
>>>>  After loading the set file you want to decompose, run the following
>>>> command.
>>>>
>>>>  [wts,sph] = binica(EEG.data(:,:), 'extended', 1);
>>>> EEG.icaweights = wts;
>>>> EEG.icasphere = sph;
>>>> EEG = eeg_checkset(EEG, 'ica');
>>>> eeglab redraw
>>>>
>>>>  Makoto
>>>>
>>>>
>>>> 2014-04-30 11:59 GMT-07:00 Natalie Prowse <
>>>> NatalieProwse at cmail.carleton.ca>:
>>>>
>>>>> Hi,
>>>>>
>>>>> I have the windows version of BINICA on my C: drive.
>>>>>
>>>>> I have verified that the PATH variable contains the path to the file:
>>>>> C:\NICERLAB\Artifact_removal_code\BinICA
>>>>>
>>>>> I have verified that in the eeglab install
>>>>> \functions\sigprocfunc\icadefs.m the ICABINARY variable is properly set:
>>>>> ICABINARY = 'C:\NICERLAB\Artifact_removal_code\BinICA\ica.exe';
>>>>>
>>>>> And yet, after loading a Brain Vision file and then clicking on
>>>>> Tools->Run ICA  I do not always get presented with BINICA as an option.  I
>>>>> also have FASTICA installed, and it doesn't show up either.  This is RANDOM
>>>>> - sometimes I see BINICA in the list, but more often times, I don't.  I
>>>>> cannot pinpoint what is different when it's working vs not.
>>>>>
>>>>> Any ideas what could be interfering with EEGLab's ability to display
>>>>> the BINICA or FASTICA option to me?
>>>>>
>>>>> Thanks,
>>>>> -Natalie
>>>>> _______________________________________________
>>>>> Eeglablist page: http://sccn.ucsd.edu/eeglab/eeglabmail.html
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>>>>>
>>>>
>>>>
>>>>
>>>>  --
>>>> Makoto Miyakoshi
>>>> Swartz Center for Computational Neuroscience
>>>> Institute for Neural Computation, University of California San Diego
>>>>
>>>> _______________________________________________
>>>> Eeglablist page: http://sccn.ucsd.edu/eeglab/eeglabmail.html
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>>>
>>
>>
>> --
>> Makoto Miyakoshi
>> Swartz Center for Computational Neuroscience
>> Institute for Neural Computation, University of California San Diego
>>
>> --
>> *************************************************
>> Jacob E. Anderson, MA
>> Doctoral Student
>> Institute of Child Development
>> 51 East River Rd.
>> Minneapolis, MN  55455
>>
>> E-mail: jea at umn.edu
>> Web: Click Here<http://www.cehd.umn.edu/icd/people/gradstudents/andersonJ.html>
>> Cell:    763-458-7152
>>
>>


-- 
*************************************************
Jacob E. Anderson, MA
Doctoral Student
Institute of Child Development
51 East River Rd.
Minneapolis, MN  55455

E-mail: jea at umn.edu
Web: Click Here<http://www.cehd.umn.edu/icd/people/gradstudents/andersonJ.html>
Cell:    763-458-7152
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