[Eeglablist] scripting advice

[Marco Buiatti]

Dear Alexandre,

Your issue with ADJUST is not entirely clear to me. What do you refer to
with "the next steps"?

Best,

Marco, ADJUST developer.

On 31 January 2016 at 23:18, Tarik S Bel-Bahar <tarikbelbahar at gmail.com>
wrote:

> Hello Alexandre, here's a few points below that might help. all the best.
>
> 1. Make sure to update the EEG structure with the proper command. See eegh
> after running runica from gui.
> 2. Regarding ADJUST, you may want to CC it's developers, and also make
> sure you are having clear evidence that it works (or not) for you from
> their plugin gui.
> 3. If you haven't had a chance to, please closely review the online
> scripting tutorials for eeglab...as it's important to have gone through
> tutorial steps with tutorial data, doing steps from the gui, checking the
> eegh for the history of commands, being well-familiar with the EEG
> structure, etc....
> 4. Also it looks like you're not just using eeglab, but also erplab. If
> that is correct, remember that inter-operability can be low or unclear or
> undocumented between various eeg processing softwares. In these cases it is
> usually necessary to have very clear control of what's happening and
> expected by each program.
> 5. Last, note that adding extra fields to the actual events info in eeglab
> can be a little tricky, and may lead it to get confused. For safety's sake
> I would recommend having another structure from which relevant info is
> called as needed.
>
>
>
>
>
> On Sat, Jan 30, 2016 at 5:36 AM, Alexandre Obert <
> obert.alexandre at gmail.com> wrote:
>
>>
>> Dear all,
>>
>> I'm trying to scrip the processing of my data and I've got a warning in
>> command window but I don't know if it's a serious one nor how to correct my
>> script.
>>
>> * Detected non-binlabeled event codes:
>> ""
>>
>> * Detected bin-labeled event codes:
>> B1(S11) B2(S12) B3(S21)
>>
>> Warning: converting all event types to strings
>> Event resorted by increasing latencies.
>> Event resorted by increasing latencies.
>> EEG.event was updated.
>> pop_epoch():53 epochs selected
>> Epoching...
>> pop_epoch():53 epochs generated
>> Scaling components to RMS microvolt
>> eeg_checkset: recomputing the ICA activation matrix ...
>> eeg_checkset: found empty values for field 'bepoch'
>>               filling with values of other events in the same epochs
>> eeg_checkset: found empty values for field 'bvmknum'
>>               filling with values of other events in the same epochs
>> eeg_checkset: found empty values for field 'bvtime'
>>               filling with values of other events in the same epochs
>> eeg_checkset: found empty values for field 'channel'
>>               filling with values of other events in the same epochs
>> eeg_checkset: found empty values for field 'item'
>>               filling with values of other events in the same epochs
>> pop_epoch(): checking epochs for data discontinuity
>> Zero latencies OK.
>>
>>
>>
>> -------------------------------------------------------------------------------
>> Warning: EEG.event and EEG.EVENTLIST.eventinfo structure will not longer
>> match.
>> EEG.event only contains info about events within each epoch.
>> EEG.EVENTLIST.eventinfo still contains all the original (continuous)
>> events info.
>> The purpose of this is to allow users to set flags during artifact
>> detection,and to rebuild a continuous EVENTLIST with this info.
>>
>>
>> I'm also trying to run ICA and automatic component detection of ADJUST
>> plugin with my script.
>> I just enter this:
>>
>>  EEG = pop_runica(EEG, 'extended',1,'interupt','on');
>>         EEG = interface_ADJ(EEG,[EEG.setname '_report.txt']);
>>
>> But I don't know how to stop the process: it launches the next steps
>> before I check and reject components.
>>
>> Regards,
>>
>> Alexandre Obert
>>
>>
>>
>>
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>
>
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-- 
Marco Buiatti

Neonatal Neurocognition Lab
Center for Mind/Brain Sciences
University of Trento,
Corso Bettini 31, 38068 Rovereto (TN), Italy
E-mail: marco.buiatti at unitn.it
Phone: +39 0464-808178
https://sites.google.com/a/unitn.it/marcobuiatti/

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