[Eeglablist] scripting advice

[Makoto Miyakoshi]

Dear Alexandre,

> Warning: converting all event types to strings

It's ok. Next time, try to avoid using numbers as event labels.

> Warning: EEG.event and EEG.EVENTLIST.eventinfo structure will not longer
match.
EEG.event only contains info about events within each epoch.
EEG.EVENTLIST.eventinfo still contains all the original (continuous) events
info.
The purpose of this is to allow users to set flags during artifact
detection,and to rebuild a continuous EVENTLIST with this info.

This one may be critical. This most likely suggests you have problem in
consistency in event structure.

>  EEG = pop_runica(EEG, 'extended',1,'interupt','on');
>         EEG = interface_ADJ(EEG,[EEG.setname '_report.txt']);
>
> But I don't know how to stop the process: it launches the next steps
before I check and reject components.

If you want to add manual operation after ICA, you should separate the
function into ICA part and ADJUST part.

Makoto


On Sat, Jan 30, 2016 at 7:36 PM, Alexandre Obert <obert.alexandre at gmail.com>
wrote:

>
> Dear all,
>
> I'm trying to scrip the processing of my data and I've got a warning in
> command window but I don't know if it's a serious one nor how to correct my
> script.
>
> * Detected non-binlabeled event codes:
> ""
>
> * Detected bin-labeled event codes:
> B1(S11) B2(S12) B3(S21)
>
> Warning: converting all event types to strings
> Event resorted by increasing latencies.
> Event resorted by increasing latencies.
> EEG.event was updated.
> pop_epoch():53 epochs selected
> Epoching...
> pop_epoch():53 epochs generated
> Scaling components to RMS microvolt
> eeg_checkset: recomputing the ICA activation matrix ...
> eeg_checkset: found empty values for field 'bepoch'
>               filling with values of other events in the same epochs
> eeg_checkset: found empty values for field 'bvmknum'
>               filling with values of other events in the same epochs
> eeg_checkset: found empty values for field 'bvtime'
>               filling with values of other events in the same epochs
> eeg_checkset: found empty values for field 'channel'
>               filling with values of other events in the same epochs
> eeg_checkset: found empty values for field 'item'
>               filling with values of other events in the same epochs
> pop_epoch(): checking epochs for data discontinuity
> Zero latencies OK.
>
>
>
> -------------------------------------------------------------------------------
> Warning: EEG.event and EEG.EVENTLIST.eventinfo structure will not longer
> match.
> EEG.event only contains info about events within each epoch.
> EEG.EVENTLIST.eventinfo still contains all the original (continuous)
> events info.
> The purpose of this is to allow users to set flags during artifact
> detection,and to rebuild a continuous EVENTLIST with this info.
>
>
> I'm also trying to run ICA and automatic component detection of ADJUST
> plugin with my script.
> I just enter this:
>
>  EEG = pop_runica(EEG, 'extended',1,'interupt','on');
>         EEG = interface_ADJ(EEG,[EEG.setname '_report.txt']);
>
> But I don't know how to stop the process: it launches the next steps
> before I check and reject components.
>
> Regards,
>
> Alexandre Obert
>
>
>
>
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-- 
Makoto Miyakoshi
Swartz Center for Computational Neuroscience
Institute for Neural Computation, University of California San Diego
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