[Eeglablist] Get Clean Raw Data to report removed channels

[Velu Prabhakar Kumaravel]

Hi Paul Anthony,

Here's the command that I'd use to identify the removed channel indices

*removed_ch = find(EEG.etc.clean_channel_mask == 0); % List of removed
channels by Clean_Raw_Data*

But, if your problem is to interpolate the removed electrodes, you'd not
necessarily need that. I propose the following solution.

Assuming your original dataset is indexed #1, and the CRD processed dataset
is at #2, the following two command lines would create a #3 dataset with
interpolated channels:


*EEG = pop_interp(EEG, ALLEEG(1).chanlocs, 'spherical');[ALLEEG EEG
CURRENTSET] = pop_newset(ALLEEG, EEG, 2,'gui','off'); *
*eeglab redraw;*

If the assumptions are not valid, you can change numbers 1 and 2
accordingly.

Hope this helps.

Best,

Velu Prabhakar Kumaravel, PhD Student
Center for Mind/Brain Sciences,
University of Trento, Italy


On Wed, 17 Mar 2021 at 19:10, Beach, Paul Anthony via eeglablist <
eeglablist at sccn.ucsd.edu> wrote:

> Thank you Clement! I will check this out.
> To confirm - I would run this after running CRD, correct?
>
> On Mar 17, 2021, at 1:42 PM, Clement Lee <cll008 at eng.ucsd.edu<mailto:
> cll008 at eng.ucsd.edu>> wrote:
>
> Hi Paul,
>
> Here's a line I just wrote that hopefully helps:
> rmChanIdx = find(~ismember({EEG.chanlocs.labels},
> {cleanedEEG.chanlocs.labels}));
> IIRC CRD changes the chanlocs structure when removing channels. If this is
> the case, we can compare the chanlocs structure before and after clean raw
> data. `rmChanIdx` stands for removed channel indices. You can access the
> channel labels with `EEG.chanlocs(rmChanIdx).labels` to see the labels of
> the removed channels.
>
> Best,
> Clement Lee
> Applications Programmer
> Swartz Center for Computational Neuroscience
> Institute for Neural Computation, UC San Diego
> 858-822-7535
>
>
> On Wed, Mar 17, 2021 at 8:47 AM Beach, Paul Anthony via eeglablist <
> eeglablist at sccn.ucsd.edu<mailto:eeglablist at sccn.ucsd.edu>> wrote:
> Hello EEGLAB community,
>
> Does anyone have a quick script that could be added to the clean_raw_data
> (CRD) function (or separately on command line) to spit out exactly what
> channels (number and name) are removed as part of the CRD function?
>
> The latter would help for quickly interpolating the removed channels.
> As it is I have to stare at a list of original channels/numbers and
> compare it to the subsequent one leftover after CRD. It’s painful.
>
> Thanks!
> --
> Paul Beach DO, PhD
> PGY5, Movement Disorder Fellow
> Department of Neurology
> Emory University School of Medicine
>
>
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