[Eeglablist] how to apply ICA methods on pre-clinical electrode configurations

Scott Makeig smakeig at gmail.com
Sun Jan 17 15:27:19 PST 2021

Brian -

The commandline function topoplot.m has a mode in which you can plot
interpolated electrode positions specified in a rectangular grid (with
arbitrary 'missing nodes', allowing any grid shape). This can be used to
plot the IC 'maps'.

As for your main question, read the EEGLAB wiki on building an EEG dataset.


On Sat, Jan 16, 2021 at 11:30 PM Brian Harvey <brian.harvey at biogen.com>

> Hi all,
> A bit of a hack attempt here... I have LFP data using a 16 channel linear
> probe in VPL/VPM thalamus (in mouse)... I can successfully run ICA using
> [w,s] = cudaica(LFP,'extended', 1, 'maxsteps', 2048);
> If I am only interested in the spectral properties of the components (not
> scalp topographies etc) how can I manually plot them for rejection or
> selection? EEGlab functions require channel locations to proceed further
> and I am uncertain how to hack.
> Thanks for any insight/assistance
> Brian
> _______________________________________________
> Eeglablist page: http://sccn.ucsd.edu/eeglab/eeglabmail.html
> To unsubscribe, send an empty email to
> eeglablist-unsubscribe at sccn.ucsd.edu
> For digest mode, send an email with the subject "set digest mime" to
> eeglablist-request at sccn.ucsd.edu

Scott Makeig, Research Scientist and Director, Swartz Center for
Computational Neuroscience, Institute for Neural Computation, University of
California San Diego, La Jolla CA 92093-0559, http://sccn.ucsd.edu/~scott

More information about the eeglablist mailing list