[Eeglablist] AMICA and ICLabel

[Makoto Miyakoshi]

Dear Edward,

Theoretically yes!
Try to separate the problems. Check if your amica is successfully run. It
is also possible that your code does not generate EEG.icaact, which depends
on your initial EEGLAB installation. See my article here
https://sccn.ucsd.edu/wiki/Makoto's_preprocessing_pipeline#EEG.icaact_is_empty.21.3F_.2806.2F15.2F2021_updated.29

Makoto

On Tue, Mar 7, 2023 at 4:52 PM Edward Lannon <elannon at stanford.edu> wrote:

> Dear EEGLab users,
>
> Is it possible to use IClabel on ICs from AMICA. I use the following
> script to develop ICs with AMICA, but I am unable to use IClabel on the
> results.
>
>  %Runs ICA AMICA
>             % define parameters
>               numprocs = 1; % # of nodes
>               max_threads = 10; % # of threads
>               num_models = 1; % # of models of mixture ICA
>               max_iter = 2000; % max number of learning steps
>
>             %Create Out folder for AMICA Files
>             finalFolderName=[EEG.setname(1:end-16) '_AMICA']
>             outdir = [ folderOutAmica filesep finalFolderName filesep ]
>
>              % Run amica
>               EEG = pop_runamica(EEG, 'num_models',num_models,
> 'outdir',outdir, ...
>             'numprocs', numprocs, 'max_threads', max_threads,
> 'max_iter',max_iter);
>
>             %Load AMICA folder saved
>             EEG.etc.amica  = loadmodout15([outdir]);
>
>           %Runs ICALabel
>             EEG = iclabel(EEG, 'default');
>
>
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